* installing *source* package 'hmcdm' ...
** package 'hmcdm' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_01_1577/RtmpgvdVch/R.INSTALL3293069de2696/hmcdm/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c basic_functions.cpp -o basic_functions.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extract_functions.cpp -o extract_functions.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mcmc_functions.cpp -o mcmc_functions.o
mcmc_functions.cpp: In function 'Rcpp::List parm_update_HO_RT_joint_g(const arma::cube&, arma::cube&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::vec&, arma::vec&, arma::mat&, arma::cube, arma::mat&, arma::mat, Rcpp::List, int, double, arma::mat, double, arma::vec, double, double)':
mcmc_functions.cpp:1178:36: warning: 't_star' may be used uninitialized [-Wmaybe-uninitialized]
1178 | Gs.row(i) = G2vec_efficient_g(ETA,J_incidence,alphas.subcube(i,0,0,i,(K-1),(T-1)),
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1179 | t_star,Q_matrix,Design_array,i).t();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mcmc_functions.cpp:1145:61: note: 't_star' was declared here
1145 | double a_alpha, scl_alpha, mu_gamma, sd_gamma, alpha_sqr, t_star;
| ^~~~~~
mcmc_functions.cpp: In function 'Rcpp::List parm_update_HO_RT_sep_g(arma::cube, arma::cube&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::vec&, arma::vec&, arma::vec&, arma::cube, arma::mat&, arma::mat, Rcpp::List, int, double, double, double, arma::vec, double, double)':
mcmc_functions.cpp:637:36: warning: 't_star' may be used uninitialized [-Wmaybe-uninitialized]
637 | Gs.row(i) = G2vec_efficient_g(ETA,J_incidence,alphas.subcube(i,0,0,i,(K-1),(T-1)),
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
638 | t_star,Q_matrix,Design_array,i).t();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mcmc_functions.cpp:606:61: note: 't_star' was declared here
606 | double a_alpha, scl_alpha, mu_gamma, sd_gamma, alpha_sqr, t_star;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c resp_functions.cpp -o resp_functions.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rt_functions.cpp -o rt_functions.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/progress/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c trans_functions.cpp -o trans_functions.o
trans_functions.cpp: In function 'arma::cube sim_alphas(std::string, Rcpp::Nullable<arma::Col<double>&>, Rcpp::Nullable<arma::Col<double>&>, Rcpp::Nullable<arma::Mat<double>&>, Rcpp::Nullable<arma::Cube<double>&>, Rcpp::Nullable<arma::Col<double> >, Rcpp::Nullable<arma::Mat<double>&>, int, int, Rcpp::Nullable<arma::Mat<double>&>, Rcpp::Nullable<arma::Mat<double> >)':
trans_functions.cpp:532:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
532 | for(unsigned int i=0; i<N; i++){
| ~^~
In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:669,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29,
from trans_functions.cpp:1:
In constructor 'arma::Mat<eT>::Mat(arma::uword, arma::uword) [with eT = double]',
inlined from 'arma::cube sim_alphas(std::string, Rcpp::Nullable<arma::Col<double>&>, Rcpp::Nullable<arma::Col<double>&>, Rcpp::Nullable<arma::Mat<double>&>, Rcpp::Nullable<arma::Cube<double>&>, Rcpp::Nullable<arma::Col<double> >, Rcpp::Nullable<arma::Mat<double>&>, int, int, Rcpp::Nullable<arma::Mat<double>&>, Rcpp::Nullable<arma::Mat<double> >)' at trans_functions.cpp:529:24:
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:65:21: warning: 'K' may be used uninitialized [-Wmaybe-uninitialized]
65 | , n_elem(in_n_rows*in_n_cols)
| ~~~~~~~~~^~~~~~~~~~
trans_functions.cpp: In function 'arma::cube sim_alphas(std::string, Rcpp::Nullable<arma::Col<double>&>, Rcpp::Nullable<arma::Col<double>&>, Rcpp::Nullable<arma::Mat<double>&>, Rcpp::Nullable<arma::Cube<double>&>, Rcpp::Nullable<arma::Col<double> >, Rcpp::Nullable<arma::Mat<double>&>, int, int, Rcpp::Nullable<arma::Mat<double>&>, Rcpp::Nullable<arma::Mat<double> >)':
trans_functions.cpp:507:16: note: 'K' was declared here
507 | unsigned int K;
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o hmcdm.dll tmp.def RcppExports.o basic_functions.o extract_functions.o mcmc_functions.o resp_functions.o rt_functions.o trans_functions.o -fopenmp -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_01_1577/RtmpgvdVch/R.INSTALL3293069de2696/hmcdm/src'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_01_1577/RtmpgvdVch/R.INSTALL3293069de2696/hmcdm/src'
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_01_1577/RtmpgvdVch/R.INSTALL3293069de2696/hmcdm/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-hmcdm/00new/hmcdm/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'hmcdm' as hmcdm_2.1.1.zip
* DONE (hmcdm)