• using R version 4.3.3 (2024-02-29 ucrt)
• using platform: x86_64-w64-mingw32 (64-bit)
• R was compiled by     gcc.exe (GCC) 12.3.0     GNU Fortran (GCC) 12.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'hacksig/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'hacksig' version '0.1.2'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'hacksig' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [5s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking re-building of vignette outputs ... [36s] ERROR Error(s) in re-building vignettes: --- re-building 'hacksig.Rmd' using rmarkdown Quitting from hacksig.Rmd:215-225 [unnamed-chunk-19] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `msigdbr()`: ! Unknown subcollection. --- Backtrace:     ▆  1. ├─... %>% deframe()  2. ├─tibble::deframe(.)  3. ├─dplyr::mutate(., genes = map(genes, compose(as_vector, unname)))  4. ├─tidyr::nest(., genes = c(gene_symbol))  5. ├─dplyr::distinct(., gs_name, gene_symbol)  6. └─msigdbr::msigdbr(species = "Homo sapiens", subcategory = "KEGG") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'hacksig.Rmd' failed with diagnostics: Unknown subcollection. --- failed re-building 'hacksig.Rmd' SUMMARY: processing the following file failed:   'hacksig.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [17s] OK
• checking HTML version of manual ... [3s] OK
• DONE

Status: 1 ERROR