* installing *source* package 'gremlin' ...
** package 'gremlin' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/2024_12_25_01_50_00_20757/Rtmpi2rUsZ/R.INSTALL2f4f0603e7706/gremlin/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ai.cc -o ai.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c chol2inv_ii.c -o chol2inv_ii.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs.c -o cs.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_cov2cor.c -o cs_cov2cor.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_directsum.c -o cs_directsum.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_directsumupdate.c -o cs_directsumupdate.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_droprowcol.cc -o cs_droprowcol.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_inv.c -o cs_inv.o
cs_inv.c: In function 'cs_inv':
cs_inv.c:59:15: warning: 'irow' may be used uninitialized [-Wmaybe-uninitialized]
59 | indxr[i]=irow;
| ~~~~~~~~^~~~~
cs_inv.c:7:20: note: 'irow' was declared here
7 | int n, i, icol,irow,j,k,l,ll;
| ^~~~
cs_inv.c:66:12: warning: 'icol' may be used uninitialized [-Wmaybe-uninitialized]
66 | if (ll != icol) {
| ^
cs_inv.c:7:15: note: 'icol' was declared here
7 | int n, i, icol,irow,j,k,l,ll;
| ^~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_inv_withDiagMod.c -o cs_inv_withDiagMod.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_kroneckerA.c -o cs_kroneckerA.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_kroneckerAupdate.c -o cs_kroneckerAupdate.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_kroneckerI.c -o cs_kroneckerI.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_kroneckerIupdate.c -o cs_kroneckerIupdate.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_omega.c -o cs_omega.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_omegaupdate.c -o cs_omegaupdate.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_schur.c -o cs_schur.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gradFun.cc -o gradFun.o
gradFun.cc: In function 'int gradFun_fd(double*, int, double, double*, double, int*, double*, int, int, int*, int, int, double*, cs*, cs*, cs*, int*, double, int*, cs**, cs*, cs*, cs*, cs*, cs*, css*, double, int, int*, int*, int*, int)':
gradFun.cc:256:22: warning: 'tWKRinv' may be used uninitialized [-Wmaybe-uninitialized]
256 | Lc = reml(n, dimZWG, nG, p, y,
| ~~~~^~~~~~~~~~~~~~~~~~~~~
257 | Bpinv, W, tW, rfxlvls, rfxlL,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
258 | R, Rinv, G, Ginv, ndgeninv, geninv,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
259 | KRinv, KGinv, tWKRinv, tWKRinvW, Ctmp,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
260 | RHS, tmpBLUXs, BLUXs, r,
| ~~~~~~~~~~~~~~~~~~~~~~~~
261 | sLc,
| ~~~~
262 | &tyPy, &logDetC, &sigma2e,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
263 | tyRinvy,
| ~~~~~~~~
264 | nminffx,
| ~~~~~~~~
265 | &loglik,
| ~~~~~~~~
266 | 1, 0, 0, lmbda);
| ~~~~~~~~~~~~~~~
gradFun.cc:106:23: note: 'tWKRinv' was declared here
106 | cs *R, *Rinv, *tWKRinv, *tWKRinvW, *ttWKRinvW;
| ^~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gremlin.cc -o gremlin.o
gremlin.cc: In function 'void ugremlin(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, int*, int*, int*, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, double*, double*, double*, int*, int*, double*, int*)':
gremlin.cc:1064:18: warning: 'Lc' may be used uninitialized [-Wmaybe-uninitialized]
1064 | AI = ai(BLUXs, Ginv, R, KRinv, tWKRinv,
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1065 | res, W, tW, ny[0], p[0], nG, rfxlvls, nffx, Lc->L, sLc->pinv,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1066 | nG, 1.0);
| ~~~~~~~~
gremlin.cc:106:11: note: 'Lc' was declared here
106 | csn *Lc;
| ^~
gremlin.cc:1064:18: warning: 'sLc' may be used uninitialized [-Wmaybe-uninitialized]
1064 | AI = ai(BLUXs, Ginv, R, KRinv, tWKRinv,
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1065 | res, W, tW, ny[0], p[0], nG, rfxlvls, nffx, Lc->L, sLc->pinv,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1066 | nG, 1.0);
| ~~~~~~~~
gremlin.cc:105:11: note: 'sLc' was declared here
105 | css *sLc;
| ^~~
gremlin.cc:1036:24: warning: 'prtCinv' may be used uninitialized [-Wmaybe-uninitialized]
1036 | CinvX = chol2inv_ii(Lc->L, sLc->pinv, prtCinv, Zdiagp, Cinv_ii, CinvX);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gremlin.cc:100:22: note: 'prtCinv' was declared here
100 | *Ctmp, *C, *prtCinv,
| ^~~~~~~
gremlin.cc:1136:12: warning: 'Ctmp' may be used uninitialized [-Wmaybe-uninitialized]
1136 | cs_spfree(Ctmp); cs_spfree(prtCinv);
| ~~~~~~~~~^~~~~~
gremlin.cc:100:11: note: 'Ctmp' was declared here
100 | *Ctmp, *C, *prtCinv,
| ^~~~
gremlin.cc:1064:18: warning: 'tWKRinv' may be used uninitialized [-Wmaybe-uninitialized]
1064 | AI = ai(BLUXs, Ginv, R, KRinv, tWKRinv,
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1065 | res, W, tW, ny[0], p[0], nG, rfxlvls, nffx, Lc->L, sLc->pinv,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1066 | nG, 1.0);
| ~~~~~~~~
gremlin.cc:99:30: note: 'tWKRinv' was declared here
99 | *R, *Rinv, *KRinv, *tWKRinv, *tWKRinvW, *ttWKRinvW,
| ^~~~~~~
gremlin.cc:1064:18: warning: 'KRinv' may be used uninitialized [-Wmaybe-uninitialized]
1064 | AI = ai(BLUXs, Ginv, R, KRinv, tWKRinv,
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1065 | res, W, tW, ny[0], p[0], nG, rfxlvls, nffx, Lc->L, sLc->pinv,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1066 | nG, 1.0);
| ~~~~~~~~
gremlin.cc:99:22: note: 'KRinv' was declared here
99 | *R, *Rinv, *KRinv, *tWKRinv, *tWKRinvW, *ttWKRinvW,
| ^~~~~
gremlin.cc:1129:26: warning: 'Rinv' may be used uninitialized [-Wmaybe-uninitialized]
1129 | cs_spfree(R); cs_spfree(Rinv);
| ~~~~~~~~~^~~~~~
gremlin.cc:99:15: note: 'Rinv' was declared here
99 | *R, *Rinv, *KRinv, *tWKRinv, *tWKRinvW, *ttWKRinvW,
| ^~~~
gremlin.cc:1050:14: warning: 'R' may be used uninitialized [-Wmaybe-uninitialized]
1050 | AI = ai(BLUXs, Ginv, R, 0, 0,
| ~~^~~~~~~~~~~~~~~~~~~~~~
1051 | y, W, tW, ny[0], p[0], nG, rfxlvls, nffx, Lc->L, sLc->pinv,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1052 | 0, sigma2e);
| ~~~~~~~~~~~
gremlin.cc:99:11: note: 'R' was declared here
99 | *R, *Rinv, *KRinv, *tWKRinv, *tWKRinvW, *ttWKRinvW,
| ^
gremlin.cc:315:18: warning: 'tWKRinvW' may be used uninitialized [-Wmaybe-uninitialized]
315 | cs_spfree(tWKRinvW);
| ~~~~~~~~~^~~~~~~~~~
gremlin.cc:99:40: note: 'tWKRinvW' was declared here
99 | *R, *Rinv, *KRinv, *tWKRinv, *tWKRinvW, *ttWKRinvW,
| ^~~~~~~~
In function 'double simple_toc(const double*)',
inlined from 'void ugremlin(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, int*, int*, int*, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, double*, double*, double*, int*, int*, double*, int*)' at gremlin.cc:256:20:
gremlin.cc:40:22: warning: 't[0]' may be used uninitialized [-Wmaybe-uninitialized]
40 | return ((toc [0] - tic [0]) + 1e-9 * (toc [1] - tic [1])) ;
| ~~~~~~~~~^~~~~~~~~~
gremlin.cc: In function 'void ugremlin(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, int*, int*, int*, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, double*, double*, double*, int*, int*, double*, int*)':
gremlin.cc:115:10: note: 't[0]' was declared here
115 | double t[2], T[2], took, tyPy, tyRinvy, logDetC, sigma2e,
| ^
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c qNewtRhap.cc -o qNewtRhap.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c reml.cc -o reml.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tugug_trace.cc -o tugug_trace.o
g++ -std=gnu++17 -shared -s -static-libgcc -o gremlin.dll tmp.def ai.o chol2inv_ii.o cs.o cs_cov2cor.o cs_directsum.o cs_directsumupdate.o cs_droprowcol.o cs_inv.o cs_inv_withDiagMod.o cs_kroneckerA.o cs_kroneckerAupdate.o cs_kroneckerI.o cs_kroneckerIupdate.o cs_omega.o cs_omegaupdate.o cs_schur.o gradFun.o gremlin.o init.o qNewtRhap.o reml.o tugug_trace.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_25_01_50_00_20757/Rtmpi2rUsZ/R.INSTALL2f4f0603e7706/gremlin/src'
make[1]: Entering directory '/d/temp/2024_12_25_01_50_00_20757/Rtmpi2rUsZ/R.INSTALL2f4f0603e7706/gremlin/src'
make[1]: Leaving directory '/d/temp/2024_12_25_01_50_00_20757/Rtmpi2rUsZ/R.INSTALL2f4f0603e7706/gremlin/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-gremlin/00new/gremlin/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'gremlin' as gremlin_1.1.0.zip
* DONE (gremlin)