* using log directory 'd:/Rcompile/CRANpkg/local/4.3/gaawr2.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'gaawr2/DESCRIPTION' ... OK * this is package 'gaawr2' version '0.0.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'EnsDb.Hsapiens.v75' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'gaawr2' can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-windows-x86_64/gaawr2-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [4s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [4s] OK Running 'testthat.R' [3s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [118s] ERROR Error(s) in re-building vignettes: --- re-building 'gaawr2.Rmd' using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' running: bash -c "export message=\"Hello, world!\" echo \"print('$message')\" > hello.R R CMD BATCH hello.R R --no-save -q < hello.R R --no-save -q <<END message <- Sys.getenv(\"message\"); print(message) source(\"hello.R\") END echo ${message} | \ Rscript -e ' message <- scan(\"stdin\", what=\"\", sep=\"\n\", quiet=TRUE); write.table(message, col.names=FALSE, row.names=FALSE, quote=FALSE) ' | \ cat rm hello.*" Quitting from lines 408-413 [ensdb] (gaawr2.Rmd) Error: processing vignette 'gaawr2.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building 'gaawr2.Rmd' --- re-building 'web.Rmd' using rmarkdown [WARNING] Citeproc: citation tsv not found --- finished re-building 'web.Rmd' SUMMARY: processing the following file failed: 'gaawr2.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [16s] OK * checking HTML version of manual ... [1s] OK * DONE Status: 1 ERROR, 1 NOTE