* installing *source* package 'fect' ...
** package 'fect' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
using C++11
make[1]: Entering directory '/d/temp/2024_12_20_01_50_00_19051/Rtmpq0Mnpc/R.INSTALL247481c925efe/fect/src'
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c auxiliary.cpp -o auxiliary.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binary_qr.cpp -o binary_qr.o
In file included from D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/RcppCommon.h:189,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29,
from fect.h:7,
from binary_qr.cpp:1:
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:465:46,
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:489:40,
inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:744:34,
inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from 'Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>& Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>::operator=(const T&) [with T = double; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/vector/proxy.h:157:11,
inlined from 'Rcpp::List inter_fe_d_qr_ub(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::cube, arma::mat, int, int, int, double, double)' at binary_qr.cpp:303:29:
D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'allh' may be used uninitialized [-Wmaybe-uninitialized]
442 | r_vector_start<RTYPE>(x)[0] = object;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
binary_qr.cpp: In function 'Rcpp::List inter_fe_d_qr_ub(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::cube, arma::mat, int, int, int, double, double)':
binary_qr.cpp:196:10: note: 'allh' was declared here
196 | double allh;
| ^~~~
binary_qr.cpp:293:53: warning: 'llh' may be used uninitialized [-Wmaybe-uninitialized]
293 | IC = (r*(N+T)-pow(double(r),2)+p)*log(obs)/(obs)-2*llh/(obs) ;
| ~^~~~
binary_qr.cpp:197:10: note: 'llh' was declared here
197 | double llh;
| ^~~
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:465:46,
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:489:40,
inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:744:34,
inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from 'Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>& Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>::operator=(const T&) [with T = double; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/vector/proxy.h:157:11,
inlined from 'Rcpp::List inter_fe_d_qr(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::cube, int, int, int, double, double)' at binary_qr.cpp:136:29:
D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'allh' may be used uninitialized [-Wmaybe-uninitialized]
442 | r_vector_start<RTYPE>(x)[0] = object;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
binary_qr.cpp: In function 'Rcpp::List inter_fe_d_qr(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::cube, int, int, int, double, double)':
binary_qr.cpp:33:10: note: 'allh' was declared here
33 | double allh ;
| ^~~~
binary_qr.cpp:123:61: warning: 'llh' may be used uninitialized [-Wmaybe-uninitialized]
123 | IC = (r*(N+T)-pow(double(r),2)+p)*log(double(N*T))/(N*T)-2*llh/(N*T) ;
| ~^~~~
binary_qr.cpp:34:10: note: 'llh' was declared here
34 | double llh ;
| ^~~
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binary_sub.cpp -o binary_sub.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binary_svd.cpp -o binary_svd.o
In file included from D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/RcppCommon.h:189,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29,
from fect.h:7,
from binary_svd.cpp:1:
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:465:46,
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:489:40,
inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:744:34,
inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from 'Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>& Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>::operator=(const T&) [with T = double; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/vector/proxy.h:157:11,
inlined from 'Rcpp::List inter_fe_d(arma::mat, arma::mat, arma::mat, arma::cube, int, int, int, double, double)' at binary_svd.cpp:119:29:
D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'allh' may be used uninitialized [-Wmaybe-uninitialized]
442 | r_vector_start<RTYPE>(x)[0] = object;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
binary_svd.cpp: In function 'Rcpp::List inter_fe_d(arma::mat, arma::mat, arma::mat, arma::cube, int, int, int, double, double)':
binary_svd.cpp:30:10: note: 'allh' was declared here
30 | double allh ;
| ^~~~
binary_svd.cpp:107:61: warning: 'llh' may be used uninitialized [-Wmaybe-uninitialized]
107 | IC = (r*(N+T)-pow(double(r),2)+p)*log(double(N*T))/(N*T)-2*llh/(N*T) ;
| ~^~~~
binary_svd.cpp:31:10: note: 'llh' was declared here
31 | double llh ;
| ^~~
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:465:46,
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:489:40,
inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:744:34,
inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from 'Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>& Rcpp::internal::generic_name_proxy<RTYPE, StoragePolicy>::operator=(const T&) [with T = double; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/vector/proxy.h:157:11,
inlined from 'Rcpp::List inter_fe_d_ub(arma::mat, arma::mat, arma::mat, arma::cube, arma::mat, int, int, int, double, double)' at binary_svd.cpp:267:29:
D:/RCompile/CRANpkg/lib/4.3/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'allh' may be used uninitialized [-Wmaybe-uninitialized]
442 | r_vector_start<RTYPE>(x)[0] = object;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
binary_svd.cpp: In function 'Rcpp::List inter_fe_d_ub(arma::mat, arma::mat, arma::mat, arma::cube, arma::mat, int, int, int, double, double)':
binary_svd.cpp:172:10: note: 'allh' was declared here
172 | double allh;
| ^~~~
binary_svd.cpp:256:53: warning: 'llh' may be used uninitialized [-Wmaybe-uninitialized]
256 | IC = (r*(N+T)-pow(double(r),2)+p)*log(obs)/(obs)-2*llh/(obs) ;
| ~^~~~
binary_svd.cpp:173:10: note: 'llh' was declared here
173 | double llh;
| ^~~
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fe_sub.cpp -o fe_sub.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ife.cpp -o ife.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ife_sub.cpp -o ife_sub.o
ife_sub.cpp: In function 'Rcpp::List fe_ad_covar_iter(arma::cube, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, int, double)':
ife_sub.cpp:94:20: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
94 | if (beta0.n_rows == p) {
| ~~~~~~~~~~~~~^~~~
ife_sub.cpp: In function 'Rcpp::List fe_ad_inter_covar_iter(arma::cube, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, int, int, int, int, double, double)':
ife_sub.cpp:296:20: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
296 | if (beta0.n_rows == p) {
| ~~~~~~~~~~~~~^~~~
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mc.cpp -o mc.o
g++ -shared -s -static-libgcc -o fect.dll tmp.def RcppExports.o auxiliary.o binary_qr.o binary_sub.o binary_svd.o fe_sub.o ife.o ife_sub.o mc.o -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_20_01_50_00_19051/Rtmpq0Mnpc/R.INSTALL247481c925efe/fect/src'
make[1]: Entering directory '/d/temp/2024_12_20_01_50_00_19051/Rtmpq0Mnpc/R.INSTALL247481c925efe/fect/src'
make[1]: Leaving directory '/d/temp/2024_12_20_01_50_00_19051/Rtmpq0Mnpc/R.INSTALL247481c925efe/fect/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-fect/00new/fect/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'fect' as fect_1.0.0.zip
* DONE (fect)