* installing *source* package 'epm' ...
** package 'epm' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_10_21_12_46_10_10564/Rtmp8mQO1b/R.INSTALLd4bc642d47f3/epm/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c epm_cppFunctions.cpp -o epm_cppFunctions.o
epm_cppFunctions.cpp: In function 'std::vector<int> intersect_int(std::vector<int>, std::vector<int>)':
epm_cppFunctions.cpp:40:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   40 |         for (int k = 0; k < vec1.size(); k++) {
      |                         ~~^~~~~~~~~~~~~
epm_cppFunctions.cpp: In function 'std::vector<std::__cxx11::basic_string<char> > getComponentA(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >)':
epm_cppFunctions.cpp:77:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   77 |         for (int k = 0; k < commI.size(); k++) {
      |                         ~~^~~~~~~~~~~~~~
epm_cppFunctions.cpp: In function 'Rcpp::List getRootToTipEdges(Rcpp::List)':
epm_cppFunctions.cpp:143:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  143 |         for (int i = 0; i < tipLabels.size(); i++) {
      |                         ~~^~~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp:153:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  153 |                 for (int j = 0; j < nodes.size(); j++) {
      |                                 ~~^~~~~~~~~~~~~~
epm_cppFunctions.cpp: In function 'Rcpp::NumericVector countCells(Rcpp::List, Rcpp::StringVector)':
epm_cppFunctions.cpp:325:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  325 |                 for (int j = 0; j < uniqueSp.size(); j++) {
      |                                 ~~^~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp: In function 'std::vector<int> uniqueBranchesForSet(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, Rcpp::List)':
epm_cppFunctions.cpp:423:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  423 |         for (int i = 0; i < a.size(); i++) {
      |                         ~~^~~~~~~~~~
epm_cppFunctions.cpp:428:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  428 |                 for (int j = 0; j < branchInd.size(); j++) {
      |                                 ~~^~~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp: In function 'Rcpp::NumericMatrix calcPairwisePhylosor2(Rcpp::List, Rcpp::List, Rcpp::String, bool)':
epm_cppFunctions.cpp:502:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  502 |                                         for (int k = 0; k < edgesCommIJ.size(); k++) {
      |                                                         ~~^~~~~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp:507:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  507 |                                         for (int k = 0; k < edgesInotJ.size(); k++) {
      |                                                         ~~^~~~~~~~~~~~~~~~~~~
epm_cppFunctions.cpp:512:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  512 |                                         for (int k = 0; k < edgesJnotI.size(); k++) {
      |                                                         ~~^~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o epm.dll tmp.def RcppExports.o epm_cppFunctions.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_21_12_46_10_10564/Rtmp8mQO1b/R.INSTALLd4bc642d47f3/epm/src'
make[1]: Entering directory '/d/temp/2025_10_21_12_46_10_10564/Rtmp8mQO1b/R.INSTALLd4bc642d47f3/epm/src'
make[1]: Leaving directory '/d/temp/2025_10_21_12_46_10_10564/Rtmp8mQO1b/R.INSTALLd4bc642d47f3/epm/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-epm/00new/epm/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'epm' as epm_1.1.6.zip
* DONE (epm)