• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'bullseye/DESCRIPTION' ... OK
• this is package 'bullseye' version '1.0.0'
• package encoding: UTF-8
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• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
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• checking whether package 'bullseye' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s] OK
• checking whether the package can be unloaded cleanly ... [2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s] OK
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• checking loading without being on the library search path ... [2s] OK
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• checking for unstated dependencies in examples ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [5s] ERROR Running examples in 'bullseye-Ex.R' failed The error most likely occurred in: > ### Name: add_nobs_to_pairwise > ### Title: Adds number of observations column to pairwise tibble > ### Aliases: add_nobs_to_pairwise > > ### ** Examples > > irisc <- pairwise_scores(iris[40:150,], by= "Species") > irisc <- add_nobs_to_pairwise(irisc, iris[40:150,], by= "Species") > irisc # A tibble: 24 × 7    x y score group value pair_type n    <chr> <chr> <chr> <fct> <dbl> <chr> <int>  1 Petal.Length Sepal.Length pearson setosa 0.584 nn 11  2 Petal.Width Sepal.Length pearson setosa 0.112 nn 11  3 Sepal.Length Sepal.Width pearson setosa 0.756 nn 11  4 Petal.Length Sepal.Width pearson setosa 0.650 nn 11  5 Petal.Width Sepal.Width pearson setosa 0.0694 nn 11  6 Petal.Length Petal.Width pearson setosa 0.421 nn 11  7 Petal.Length Sepal.Length pearson versicolor 0.754 nn 50  8 Petal.Width Sepal.Length pearson versicolor 0.546 nn 50  9 Sepal.Length Sepal.Width pearson versicolor 0.526 nn 50 10 Petal.Length Sepal.Width pearson versicolor 0.561 nn 50 # ℹ 14 more rows > plot_pairwise(irisc) # setosa gets a small slice in proportion to n Error: ! Problem while converting geom to grob. ℹ Error occurred in the 2nd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") Backtrace:      ▆   1. ├─base (local) `<fn>`(x)   2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)   3. │ ├─ggplot2::ggplot_gtable(data)   4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)   5. │ └─ggplot2:::by_layer(...)   6. │ ├─rlang::try_fetch(...)   7. │ │ ├─base::tryCatch(...)   8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)   9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])  10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  11. │ │ └─base::withCallingHandlers(...)  12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])  13. │ └─l$draw_geom(d, layout)  14. │ └─ggplot2 (local) draw_geom(..., self = self)  15. │ └─self$geom$draw_layer(...)  16. │ └─ggplot2 (local) draw_layer(..., self = self)  17. │ └─base::lapply(...)  18. │ └─ggplot2 (local) FUN(X[[i]], ...)  19. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))  20. │ └─self$draw_panel(...)  21. └─base::.handleSimpleError(...)  22. └─rlang (local) h(simpleError(msg, call))  23. └─handlers[[1L]](cnd)  24. └─cli::cli_abort(...)  25. └─rlang::abort(...) Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [9s] OK   Running 'testthat.R' [8s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [41s] ERROR Error(s) in re-building vignettes: --- re-building 'calc_pairwise.Rmd' using rmarkdown --- finished re-building 'calc_pairwise.Rmd' --- re-building 'integrating.Rmd' using rmarkdown Quitting from integrating.Rmd:79-84 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'integrating.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 3rd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") --- failed re-building 'integrating.Rmd' --- re-building 'vis_pairwise.Rmd' using rmarkdown Quitting from vis_pairwise.Rmd:51-53 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vis_pairwise.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 3rd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") --- failed re-building 'vis_pairwise.Rmd' SUMMARY: processing the following files failed:   'integrating.Rmd' 'vis_pairwise.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [18s] OK
• checking HTML version of manual ... [6s] OK
• DONE

Status: 2 ERRORs