• using R version 4.3.3 (2024-02-29 ucrt)
• using platform: x86_64-w64-mingw32 (64-bit)
• R was compiled by     gcc.exe (GCC) 12.3.0     GNU Fortran (GCC) 12.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'bullseye/DESCRIPTION' ... OK
• this is package 'bullseye' version '0.1.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'bullseye' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s] NOTE pairwise.matrix: no visible global function definition for '%||%' Undefined global functions or variables:   %||%
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [2s] ERROR Running examples in 'bullseye-Ex.R' failed The error most likely occurred in: > ### Name: pair_ace > ### Title: Alternating conditional expectations correlation > ### Aliases: pair_ace > > ### ** Examples > > pair_ace(iris) Error in rownames(m) %||% paste0("V", seq_along(xindex)) :   could not find function "%||%" Calls: pair_ace -> pairwise -> pairwise.data.frame -> pairwise.matrix Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [8s] ERROR   Running 'testthat.R' [8s] Running the tests in 'tests/testthat.R' failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(bullseye)   >   > test_check("bullseye")   [ FAIL 20 | WARN 0 | SKIP 0 | PASS 0 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-pair_methods.R:3:3'): pair cor ─────────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_cor(iris[c(1, 2, 51, 52, 53), ]) at test-pair_methods.R:3:3    2. ├─bullseye::pairwise(dcor, score = method, pair_type = "nn")    3. └─bullseye:::pairwise.matrix(dcor, score = method, pair_type = "nn")   ── Error ('test-pair_methods.R:9:3'): pair cancor ──────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_cancor(iris[1:4, ]) at test-pair_methods.R:9:3    2. ├─bullseye::pairwise(d, score = "cancor")    3. └─bullseye:::pairwise.data.frame(d, score = "cancor")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:16:5'): pair dcor ───────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_dcor(iris[1:4, ]) at test-pair_methods.R:16:5    2. ├─bullseye::pairwise(d, score = "dcor", pair_type = "nn")    3. └─bullseye:::pairwise.data.frame(d, score = "dcor", pair_type = "nn")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:24:3'): pair mine ───────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_mine(iris[c(1, 2, 51, 52, 53), ]) at test-pair_methods.R:24:3    2. ├─bullseye::pairwise(...)    3. └─bullseye:::pairwise.matrix(...)   ── Error ('test-pair_methods.R:31:3'): pair nmi ────────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_nmi(iris[1:4, ]) at test-pair_methods.R:31:3    2. ├─bullseye::pairwise(d, score = "nmi")    3. └─bullseye:::pairwise.data.frame(d, score = "nmi")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:39:3'): pair polychor ───────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_polychor(droplevels(iris1)) at test-pair_methods.R:39:3    2. ├─bullseye::pairwise(d, score = "polychor", pair_type = "ff")    3. └─bullseye:::pairwise.data.frame(d, score = "polychor", pair_type = "ff")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:47:3'): pair polyserial ─────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_polyserial(droplevels(iris1)) at test-pair_methods.R:47:3    2. ├─bullseye::pairwise(d, score = "polyserial")    3. └─bullseye:::pairwise.data.frame(d, score = "polyserial")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:57:3'): pair tau ────────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_tauB(iris1) at test-pair_methods.R:57:3    2. └─bullseye:::pair_tau(d, method = "B", ...)    3. ├─bullseye::pairwise(d, score = paste0("tau", method), pair_type = "ff")    4. └─bullseye:::pairwise.data.frame(...)    5. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:76:3'): pair uncertainty ────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_uncertainty(droplevels(iris1)) at test-pair_methods.R:76:3    2. ├─bullseye::pairwise(d, score = "uncertainty", pair_type = "ff")    3. └─bullseye:::pairwise.data.frame(d, score = "uncertainty", pair_type = "ff")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:85:3'): pair gkTau ──────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_gkTau(droplevels(iris1)) at test-pair_methods.R:85:3    2. ├─bullseye::pairwise(d, score = "gkTau", pair_type = "ff")    3. └─bullseye:::pairwise.data.frame(d, score = "gkTau", pair_type = "ff")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:95:3'): pair gkGamma ────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_gkGamma(droplevels(iris1)) at test-pair_methods.R:95:3    2. ├─bullseye::pairwise(d, score = "gkGamma", pair_type = "ff")    3. └─bullseye:::pairwise.data.frame(d, score = "gkGamma", pair_type = "ff")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:104:3'): pair chi ───────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_chi(droplevels(iris1)) at test-pair_methods.R:104:3    2. ├─bullseye::pairwise(d, score = "chi", pair_type = "ff")    3. └─bullseye:::pairwise.data.frame(d, score = "chi", pair_type = "ff")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:111:3'): pair ace ───────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_ace(iris[c(1, 2, 53, 55), ]) at test-pair_methods.R:111:3    2. ├─bullseye::pairwise(d, score = "ace")    3. └─bullseye:::pairwise.data.frame(d, score = "ace")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_methods.R:118:3'): pair multi ─────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pairwise_multi(iris, scores = c("pair_cor", "pair_cancor")) at test-pair_methods.R:118:3    2. ├─base::do.call(what = get(scores[i]), args = list(d = d, handle.na = handle.na))    3. └─bullseye (local) `<fn>`(d = `<df[,5]>`, handle.na = TRUE)    4. ├─bullseye::pairwise(dcor, score = method, pair_type = "nn")    5. └─bullseye:::pairwise.matrix(dcor, score = method, pair_type = "nn")   ── Error ('test-pair_scagnostics.R:4:3'): pair scagnostics ─────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pair_scagnostics(...) at test-pair_scagnostics.R:4:3    2. ├─bullseye::pairwise(d, score = sel_scag[1], pair_type = "nn")    3. └─bullseye:::pairwise.data.frame(d, score = sel_scag[1], pair_type = "nn")    4. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pair_scores.R:5:3'): pairwise scores ───────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. └─bullseye::pairwise_scores(iris[c(1, 2, 53, 55), ]) at test-pair_scores.R:5:3    2. ├─base::do.call(get(entry$funName), list(dsub, handle.na = handle.na))    3. └─bullseye (local) `<fn>`(`<df[,5]>`, handle.na = TRUE)    4. ├─bullseye::pairwise(d, score = "cancor")    5. └─bullseye:::pairwise.data.frame(d, score = "cancor")    6. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pairwise.R:4:3'): pairwise ─────────────────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. ├─bullseye::pairwise(iris[, 1:4]) at test-pairwise.R:4:3    2. └─bullseye:::pairwise.data.frame(iris[, 1:4])    3. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-pairwise.R:10:3'): pairwise from matrix ────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. ├─bullseye::pairwise(cor(iris[, 1:4])) at test-pairwise.R:10:3    2. └─bullseye:::pairwise.matrix(cor(iris[, 1:4]))   ── Error ('test-plot_pairwise.R:4:3'): plot pairwise ───────────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. ├─bullseye::plot_pairwise(pairwise(iris[1:4, ])) at test-plot_pairwise.R:4:3    2. │ └─bullseye:::check_pairwise(scores)    3. ├─bullseye::pairwise(iris[1:4, ])    4. └─bullseye:::pairwise.data.frame(iris[1:4, ])    5. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)   ── Error ('test-plot_pairwise.R:9:3'): plot pairwise linear ────────────────────   Error in `rownames(m) %||% paste0("V", seq_along(xindex))`: could not find function "%||%"   Backtrace:       ▆    1. ├─bullseye::plot_pairwise_linear(pairwise(iris[1:4, ])) at test-plot_pairwise.R:9:3    2. │ └─bullseye:::check_pairwise(scores)    3. ├─bullseye::pairwise(iris[1:4, ])    4. └─bullseye:::pairwise.data.frame(iris[1:4, ])    5. └─bullseye:::pairwise.matrix(dcor, score = score, pair_type = pair_type)      [ FAIL 20 | WARN 0 | SKIP 0 | PASS 0 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking re-building of vignette outputs ... [9s] ERROR Error(s) in re-building vignettes: --- re-building 'calc_pairwise.Rmd' using rmarkdown Quitting from lines 44-46 [unnamed-chunk-3] (calc_pairwise.Rmd) Error: processing vignette 'calc_pairwise.Rmd' failed with diagnostics: could not find function "%||%" --- failed re-building 'calc_pairwise.Rmd' --- re-building 'integrating.Rmd' using rmarkdown Quitting from lines 57-62 [corrplot_assoc] (integrating.Rmd) Error: processing vignette 'integrating.Rmd' failed with diagnostics: could not find function "%||%" --- failed re-building 'integrating.Rmd' --- re-building 'vis_pairwise.Rmd' using rmarkdown Quitting from lines 52-53 [unnamed-chunk-3] (vis_pairwise.Rmd) Error: processing vignette 'vis_pairwise.Rmd' failed with diagnostics: could not find function "%||%" --- failed re-building 'vis_pairwise.Rmd' SUMMARY: processing the following files failed:   'calc_pairwise.Rmd' 'integrating.Rmd' 'vis_pairwise.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [18s] OK
• checking HTML version of manual ... [6s] OK
• DONE

Status: 3 ERRORs, 1 NOTE