* using log directory 'd:/Rcompile/CRANpkg/local/4.3/betareg.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.3.0
GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'betareg/DESCRIPTION' ... OK
* this is package 'betareg' version '3.2-1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'betareg' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-oldrel-windows-x86_64/betareg-00install.html' for details.
* used C compiler: 'gcc.exe (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
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* checking index information ... OK
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* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
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* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
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* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [36s] OK
* checking differences from 'betareg-Ex.Rout' to 'betareg-Ex.Rout.save' ... OK
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* checking tests ... [17s] OK
Running 'betamix.R' [10s]
Comparing 'betamix.Rout' to 'betamix.Rout.save' ... OK
Running 'betatree.R' [3s]
Comparing 'betatree.Rout' to 'betatree.Rout.save' ... OK
Running 'bias.R' [2s]
Comparing 'bias.Rout' to 'bias.Rout.save' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... [24s] OK
'betareg-ext.qmd' using 'UTF-8'... [16s] OK
'betareg.qmd' using 'UTF-8'... [7s] OK
* checking re-building of vignette outputs ... [32s] ERROR
Error(s) in re-building vignettes:
--- re-building 'betareg-ext.qmd' using html
processing file: betareg-ext.qmd
Error in `flexmix::stepFlexmix()`:
! no convergence to a suitable mixture
Backtrace:
â–†
1. └─betareg::betamix(...)
2. └─flexmix::stepFlexmix(...)
Quitting from lines 1152-1155 [ReadingSkills-mix] (betareg-ext.qmd)
Execution halted
Error: processing vignette 'betareg-ext.qmd' failed with diagnostics:
✖ Error running quarto cli.
Caused by error:
! System command 'quarto.exe' failed
--- failed re-building 'betareg-ext.qmd'
--- re-building 'betareg.qmd' using html
processing file: betareg.qmd
output file: betareg.knit.md
pandoc
to: html
output-file: betareg.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.3/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
html-math-method: mathjax
toc: true
number-sections: true
metadata
document-css: false
lang: en
minimal: true
theme: none
title: Beta Regression in R
author:
- name: Francisco Cribari-Neto
affiliation: Universidade Federal de Pernambuco
address: Brazil
orcid: 0000-0002-5909-6698
email: cribari@ufpe.br
url: https://www.de.ufpe.br/~cribari/
- name: Achim Zeileis
affiliation: Universität Innsbruck
address: Austria
orcid: 0000-0003-0918-3766
email: Achim.Zeileis@R-project.org
url: https://www.zeileis.org/
abstract: |
This introduction to the R package **betareg** is a (slightly) modified version of @betareg:Cribari-Neto+Zeileis:2010, published in the _Journal of Statistical Software_. A follow-up paper with various extensions is @betareg:Gruen+Kosmidis+Zeileis:2012 -- a slightly modified version of which is also provided within the package as `vignette("betareg-ext", package = "betareg")`\
The class of beta regression models is commonly used by practitioners to model variables that assume values in the standard unit interval $(0, 1)$. It is based on the assumption that the dependent variable is beta-distributed and that its mean is related to a set of regressors through a linear predictor with unknown coefficients and a link function. The model also includes a precision parameter which may be constant or depend on a (potentially different) set of regressors through a link function as well. This approach naturally incorporates features such as heteroskedasticity or skewness which are commonly observed in data taking values in the standard unit interval, such as rates or proportions. This paper describes the **betareg** package which provides the class of beta regressions in the R system for statistical computing. The underlying theory is briefly outlined, the implementation discussed and illustrated in various replication exercises.
bibliography:
- betareg.bib
vignette: |
%\VignetteIndexEntry{Beta Regression in R} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8} %\VignetteDepends{stats,betareg,car,lmtest,sandwich,strucchange} %\VignetteKeywords{beta regression, rates, proportions, R} %\VignettePackage{betareg}
Output created: betareg.html
--- finished re-building 'betareg.qmd'
SUMMARY: processing the following file failed:
'betareg-ext.qmd'
Error: Vignette re-building failed.
Execution halted
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [7s] OK
* DONE
Status: 1 ERROR