* installing *source* package 'apcluster' ...
** package 'apcluster' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/2024_12_16_01_50_00_4579/Rtmp6FCtA5/R.INSTALL126941e1c4295/apcluster/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_apcluster.cpp -o R_init_apcluster.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c aggExClusterC.cpp -o aggExClusterC.o
aggExClusterC.cpp: In function 'int which_max_NoNA(Rcpp::NumericVector)':
aggExClusterC.cpp:74:12: warning: 'index' may be used uninitialized [-Wmaybe-uninitialized]
74 | return index;
| ^~~~~
aggExClusterC.cpp:57:9: note: 'index' was declared here
57 | int index;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c apclusterC.cpp -o apclusterC.o
apclusterC.cpp: In function 'SEXPREC* apclusterC(SEXP, SEXP, SEXP, SEXP, SEXP)':
apclusterC.cpp:69:44: warning: 'yMax' may be used uninitialized [-Wmaybe-uninitialized]
69 | (j == yMax ? max2 : max1)) + lam * oldVal;
| ~~~~~~~~~~~^~~~~~~~~~~~~~
apclusterC.cpp:49:17: note: 'yMax' was declared here
49 | int yMax;
| ^~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c apclusterLeveragedC.cpp -o apclusterLeveragedC.o
apclusterLeveragedC.cpp: In function 'SEXPREC* apclusterLeveragedC(SEXP, SEXP, SEXP, SEXP, SEXP)':
apclusterLeveragedC.cpp:63:44: warning: 'yMax' may be used uninitialized [-Wmaybe-uninitialized]
63 | (j == yMax ? max2 : max1)) + lam * R(j, ii);
| ~~~~~~~~~~~^~~~~~~~~~~~~~
apclusterLeveragedC.cpp:37:17: note: 'yMax' was declared here
37 | int yMax;
| ^~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c apclusterSparseC.cpp -o apclusterSparseC.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c distanceL.c -o distanceL.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c preferenceRangeC.cpp -o preferenceRangeC.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c preferenceRangeSparseC.cpp -o preferenceRangeSparseC.o
preferenceRangeSparseC.cpp: In function 'SEXPREC* preferenceRangeSparseC(SEXP, SEXP, SEXP, SEXP, SEXP)':
preferenceRangeSparseC.cpp:20:12: warning: unused variable 'j' [-Wunused-variable]
20 | int i, j, ii, K, temp1, temp2, length;
| ^
preferenceRangeSparseC.cpp:20:15: warning: unused variable 'ii' [-Wunused-variable]
20 | int i, j, ii, K, temp1, temp2, length;
| ^~
preferenceRangeSparseC.cpp:20:19: warning: unused variable 'K' [-Wunused-variable]
20 | int i, j, ii, K, temp1, temp2, length;
| ^
preferenceRangeSparseC.cpp:20:37: warning: unused variable 'length' [-Wunused-variable]
20 | int i, j, ii, K, temp1, temp2, length;
| ^~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o apcluster.dll tmp.def R_init_apcluster.o aggExClusterC.o apclusterC.o apclusterLeveragedC.o apclusterSparseC.o distanceL.o preferenceRangeC.o preferenceRangeSparseC.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_16_01_50_00_4579/Rtmp6FCtA5/R.INSTALL126941e1c4295/apcluster/src'
make[1]: Entering directory '/d/temp/2024_12_16_01_50_00_4579/Rtmp6FCtA5/R.INSTALL126941e1c4295/apcluster/src'
make[1]: Leaving directory '/d/temp/2024_12_16_01_50_00_4579/Rtmp6FCtA5/R.INSTALL126941e1c4295/apcluster/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-apcluster/00new/apcluster/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'heatmap' in package 'apcluster'
Creating a generic function for 'cutree' from package 'stats' in package 'apcluster'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'apcluster' as apcluster_1.4.13.zip
* DONE (apcluster)