* installing *source* package 'TiPS' ...
** package 'TiPS' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_01_1577/RtmpEdWd60/R.INSTALL322e04bd82b2f/TiPS/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Compartment.cpp -o Compartment.o
Compartment.cpp: In member function 'Node* Compartment::popNonSampledNode(const long int&)':
Compartment.cpp:84:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const long int' [-Wsign-compare]
84 | for (i=0 ; i<nodes_.size() && count<=index ; i++){
| ~~~~~^~~~~~~
Compartment.cpp: In member function 'bool Compartment::updateNodes()':
Compartment.cpp:99:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
99 | for (unsigned i=0 ; i<oldNodes_ ; i++){
| ~^~~~~~~~~~
Compartment.cpp: In member function 'void Compartment::update()':
Compartment.cpp:117:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
117 | for (unsigned i=0 ; i<oldNodes_ ; i++){
| ~^~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Node.cpp -o Node.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Phyloepid.cpp -o Phyloepid.o
Phyloepid.cpp: In member function 'bool Phyloepid::simulationTree()':
Phyloepid.cpp:76:46: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
76 | if (roots_[0]->getNbLeaves() != nbdates_){
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
Phyloepid.cpp:91:40: warning: unused variable 'height' [-Wunused-variable]
91 | double height = tmpSon->getHeight() ;
| ^~~~~~
Phyloepid.cpp:98:54: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
98 | if (roots_[0]->getNbLeaves() != nbdates_){
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
Phyloepid.cpp: In member function 'void Phyloepid::initCompartments()':
Phyloepid.cpp:218:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
218 | for (int i = 0; i < demes_.size(); ++i){
| ~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Reaction.cpp -o Reaction.o
g++ -std=gnu++17 -shared -s -static-libgcc -o TiPS.dll tmp.def Compartment.o Node.o Phyloepid.o RcppExports.o Reaction.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_01_1577/RtmpEdWd60/R.INSTALL322e04bd82b2f/TiPS/src'
make[1]: Entering directory '/d/temp/2024_11_18_01_50_01_1577/RtmpEdWd60/R.INSTALL322e04bd82b2f/TiPS/src'
make[1]: Leaving directory '/d/temp/2024_11_18_01_50_01_1577/RtmpEdWd60/R.INSTALL322e04bd82b2f/TiPS/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-TiPS/00new/TiPS/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'TiPS' as TiPS_1.2.3.zip
* DONE (TiPS)