* installing *source* package 'SemiCompRisks' ...
** package 'SemiCompRisks' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/2024_12_20_01_50_00_19051/RtmpWgOk0R/R.INSTALL2c654192d7b55/SemiCompRisks/src'
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BAFT_DPscr.c -o BAFT_DPscr.o
BAFT_DPscr.c: In function 'BAFT_DPscrmcmc':
BAFT_DPscr.c:120:22: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
120 | gsl_matrix *X1 = gsl_matrix_calloc(*n, (nP1));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:9: note: 'nP1' was declared here
111 | int nP1, nP2, nP3;
| ^~~
BAFT_DPscr.c:121:22: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
121 | gsl_matrix *X2 = gsl_matrix_calloc(*n, (nP2));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:14: note: 'nP2' was declared here
111 | int nP1, nP2, nP3;
| ^~~
BAFT_DPscr.c:122:22: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
122 | gsl_matrix *X3 = gsl_matrix_calloc(*n, (nP3));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr.c:111:19: note: 'nP3' was declared here
111 | int nP1, nP2, nP3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BAFT_DPscr_Updates.c -o BAFT_DPscr_Updates.o
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta3':
BAFT_DPscr_Updates.c:1574:42: warning: variable 'LL_negInf' set but not used [-Wunused-but-set-variable]
1574 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta1':
BAFT_DPscr_Updates.c:78:22: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
78 | mean = eta + gsl_vector_get(mu1_all, ii);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:43:22: note: 'ii' was declared here
43 | int i, j, uu, k, ii;
| ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta2':
BAFT_DPscr_Updates.c:178:22: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
178 | mean = eta + gsl_vector_get(mu2_all, ii);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:143:22: note: 'ii' was declared here
143 | int i, j, uu, k, ii;
| ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_beta3':
BAFT_DPscr_Updates.c:286:30: warning: 'ii' may be used uninitialized [-Wmaybe-uninitialized]
286 | mean = eta + gsl_vector_get(mu3_all, ii);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:244:22: note: 'ii' was declared here
244 | int i, j, uu, k, ii;
| ^~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta1':
BAFT_DPscr_Updates.c:1029:31: warning: 'temp_prop' may be used uninitialized [-Wmaybe-uninitialized]
1029 | temp_prop -= pnorm(gsl_vector_get(c0, i), mean_prop, sd, 0, 1);
| ^~
BAFT_DPscr_Updates.c:990:56: note: 'temp_prop' was declared here
990 | double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
| ^~~~~~~~~
BAFT_DPscr_Updates.c:1028:26: warning: 'temp' may be used uninitialized [-Wmaybe-uninitialized]
1028 | temp -= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 1);
| ^~
BAFT_DPscr_Updates.c:990:50: note: 'temp' was declared here
990 | double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
| ^~~~
BAFT_DPscr_Updates.c:827:29: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
827 | val /= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 0);
| ^~
BAFT_DPscr_Updates.c:742:28: note: 'val' was declared here
742 | double b_mc, sum_prob, val, mu, zeta, eta, cond;
| ^~~
BAFT_DPscr_Updates.c:778:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
778 | if(gsl_vector_get(r1Uniq_count, wh_ri) > 1) /* not singleton */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:741:31: note: 'wh_ri' was declared here
741 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta2':
BAFT_DPscr_Updates.c:1449:31: warning: 'temp_prop' may be used uninitialized [-Wmaybe-uninitialized]
1449 | temp_prop -= pnorm(gsl_vector_get(c0, i), mean_prop, sd, 0, 1);
| ^~
BAFT_DPscr_Updates.c:1410:56: note: 'temp_prop' was declared here
1410 | double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
| ^~~~~~~~~
BAFT_DPscr_Updates.c:1448:26: warning: 'temp' may be used uninitialized [-Wmaybe-uninitialized]
1448 | temp -= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 1);
| ^~
BAFT_DPscr_Updates.c:1410:50: note: 'temp' was declared here
1410 | double mu_prop, zeta_prop, mu_ini, zeta_ini, temp, temp_prop;
| ^~~~
BAFT_DPscr_Updates.c:1247:29: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
1247 | val /= pnorm(gsl_vector_get(c0, i), mean, sd, 0, 0);
| ^~
BAFT_DPscr_Updates.c:1160:28: note: 'val' was declared here
1160 | double b_mc, sum_prob, val, mu, zeta, eta, cond;
| ^~~
BAFT_DPscr_Updates.c:1196:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
1196 | if(gsl_vector_get(r2Uniq_count, wh_ri) > 1) /* not singleton */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1159:31: note: 'wh_ri' was declared here
1159 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~
BAFT_DPscr_Updates.c: In function 'BAFT_DPscr_update_mu_zeta3':
BAFT_DPscr_Updates.c:1713:23: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
1713 | if(j == wh_ri)
| ^
BAFT_DPscr_Updates.c:1574:31: note: 'wh_ri' was declared here
1574 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~
In file included from BAFT_DPscr_Updates.c:16:
D:/RCompile/recent/R-4.3.3/include/Rmath.h: In function 'BAFT_DPscr_update_gamma':
D:/RCompile/recent/R-4.3.3/include/Rmath.h:230:25: warning: 'sd3' may be used uninitialized [-Wmaybe-uninitialized]
230 | #define dnorm4 Rf_dnorm4
| ^~~~~~~~~
BAFT_DPscr_Updates.c:1962:31: note: 'sd3' was declared here
1962 | double mean3, mean3_prop, sd3;
| ^~~
D:/RCompile/recent/R-4.3.3/include/Rmath.h:230:25: warning: 'mean3_prop' may be used uninitialized [-Wmaybe-uninitialized]
230 | #define dnorm4 Rf_dnorm4
| ^~~~~~~~~
BAFT_DPscr_Updates.c:1962:19: note: 'mean3_prop' was declared here
1962 | double mean3, mean3_prop, sd3;
| ^~~~~~~~~~
D:/RCompile/recent/R-4.3.3/include/Rmath.h:230:25: warning: 'mean3' may be used uninitialized [-Wmaybe-uninitialized]
230 | #define dnorm4 Rf_dnorm4
| ^~~~~~~~~
BAFT_DPscr_Updates.c:1962:12: note: 'mean3' was declared here
1962 | double mean3, mean3_prop, sd3;
| ^~~~~
BAFT_DPscr_Updates.c:2020:32: warning: 'ii3' may be used uninitialized [-Wmaybe-uninitialized]
2020 | mean3 = eta3 + gsl_vector_get(mu3_all, ii3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:29: note: 'ii3' was declared here
1956 | int i, uu, k, ii1, ii2, ii3;
| ^~~
BAFT_DPscr_Updates.c:2005:24: warning: 'ii2' may be used uninitialized [-Wmaybe-uninitialized]
2005 | mean2 = eta2 + gsl_vector_get(mu2_all, ii2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:24: note: 'ii2' was declared here
1956 | int i, uu, k, ii1, ii2, ii3;
| ^~~
BAFT_DPscr_Updates.c:2001:24: warning: 'ii1' may be used uninitialized [-Wmaybe-uninitialized]
2001 | mean1 = eta1 + gsl_vector_get(mu1_all, ii1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPscr_Updates.c:1956:19: note: 'ii1' was declared here
1956 | int i, uu, k, ii1, ii2, ii3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BAFT_DPsurv.c -o BAFT_DPsurv.o
BAFT_DPsurv.c: In function 'BAFT_DPunimcmc':
BAFT_DPsurv.c:74:21: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
74 | gsl_matrix *X = gsl_matrix_calloc(*n, (nP));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPsurv.c:69:9: note: 'nP' was declared here
69 | int nP;
| ^~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BAFT_DPsurv_Updates.c -o BAFT_DPsurv_Updates.o
BAFT_DPsurv_Updates.c: In function 'BAFT_DPsurv_update_mu_zeta':
BAFT_DPsurv_Updates.c:88:12: warning: 'wh_ri' may be used uninitialized [-Wmaybe-uninitialized]
88 | if(gsl_vector_get(rUniq_count, wh_ri) > 1) /* not singleton */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_DPsurv_Updates.c:48:31: note: 'wh_ri' was declared here
48 | int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
| ^~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BAFT_LNscr.c -o BAFT_LNscr.o
BAFT_LNscr.c: In function 'BAFTscrmcmc':
BAFT_LNscr.c:101:22: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
101 | gsl_matrix *X1 = gsl_matrix_calloc(*n, (nP1));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:9: note: 'nP1' was declared here
92 | int nP1, nP2, nP3;
| ^~~
BAFT_LNscr.c:102:22: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
102 | gsl_matrix *X2 = gsl_matrix_calloc(*n, (nP2));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:14: note: 'nP2' was declared here
92 | int nP1, nP2, nP3;
| ^~~
BAFT_LNscr.c:103:22: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
103 | gsl_matrix *X3 = gsl_matrix_calloc(*n, (nP3));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNscr.c:92:19: note: 'nP3' was declared here
92 | int nP1, nP2, nP3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BAFT_LNscr_Updates.c -o BAFT_LNscr_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BAFT_LNsurv.c -o BAFT_LNsurv.o
BAFT_LNsurv.c: In function 'BAFTunimcmc':
BAFT_LNsurv.c:70:21: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
70 | gsl_matrix *X = gsl_matrix_calloc(*n, (nP));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
BAFT_LNsurv.c:65:9: note: 'nP' was declared here
65 | int nP;
| ^~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BAFT_LNsurv_Updates.c -o BAFT_LNsurv_Updates.o
BAFT_LNsurv_Updates.c: In function 'BAFT_LNsurv_update_beta0':
BAFT_LNsurv_Updates.c:140:74: warning: variable 'logprior_prop' set but not used [-Wunused-but-set-variable]
140 | double eta, eta_prop, loglh, loglh_prop, logR, beta0_prop, logprior, logprior_prop;
| ^~~~~~~~~~~~~
BAFT_LNsurv_Updates.c:140:64: warning: variable 'logprior' set but not used [-Wunused-but-set-variable]
140 | double eta, eta_prop, loglh, loglh_prop, logR, beta0_prop, logprior, logprior_prop;
| ^~~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeDpCorScr.c -o BpeDpCorScr.o
BpeDpCorScr.c: In function 'BpeDpCorScrmcmc':
BpeDpCorScr.c:127:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
127 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:9: note: 'nP1' was declared here
118 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScr.c:128:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
128 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:14: note: 'nP2' was declared here
118 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScr.c:129:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
129 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:118:19: note: 'nP3' was declared here
118 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScr.c:614:98: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
614 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2+pDI3) move = 18;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr.c:483:96: note: 'pDI3' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:613:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
613 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr.c:483:90: note: 'pDI2' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:612:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
612 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr.c:483:84: note: 'pDI1' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:573:61: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:78: note: 'pBI3' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:573:54: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:72: note: 'pBI2' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:573:47: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
573 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScr.c:483:66: note: 'pBI1' was declared here
483 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScr.c:1041:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
1041 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScr.c:477:12: note: 'theta_mean' was declared here
477 | double theta_mean;
| ^~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeDpCorScrSM.c -o BpeDpCorScrSM.o
BpeDpCorScrSM.c: In function 'BpeDpCorScrSMmcmc':
BpeDpCorScrSM.c:128:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
128 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:9: note: 'nP1' was declared here
119 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScrSM.c:129:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
129 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:14: note: 'nP2' was declared here
119 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScrSM.c:130:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
130 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:119:19: note: 'nP3' was declared here
119 | int nP1, nP2, nP3;
| ^~~
BpeDpCorScrSM.c:620:98: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
620 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2+pDI3) move = 18;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM.c:489:96: note: 'pDI3' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:619:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
619 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM.c:489:90: note: 'pDI2' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:618:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
618 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM.c:489:84: note: 'pDI1' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:579:61: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:78: note: 'pBI3' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:579:54: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:72: note: 'pBI2' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:579:47: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
579 | double probSub = (1 - pMP - pDP - pCP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-9);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeDpCorScrSM.c:489:66: note: 'pBI1' was declared here
489 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, pMP, pCP, choice;
| ^~~~
BpeDpCorScrSM.c:1055:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
1055 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorScrSM.c:482:13: note: 'theta_mean' was declared here
482 | double theta_mean;
| ^~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeDpCorScrSM_Updates.c -o BpeDpCorScrSM_Updates.o
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH1':
BpeDpCorScrSM_Updates.c:507:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
507 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH2':
BpeDpCorScrSM_Updates.c:734:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
734 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH3':
BpeDpCorScrSM_Updates.c:948:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
948 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH1':
BpeDpCorScrSM_Updates.c:567:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
567 | inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
| ~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:498:27: note: 'Del' was declared here
498 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScrSM_Updates.c:577:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
577 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:507:12: note: 'nu_lam' was declared here
507 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH2':
BpeDpCorScrSM_Updates.c:793:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
793 | inc = - pow(gam, nu2) * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
| ~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:725:27: note: 'Del' was declared here
725 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScrSM_Updates.c:803:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
803 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:734:12: note: 'nu_lam' was declared here
734 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateBH3':
BpeDpCorScrSM_Updates.c:1008:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1008 | inc = - pow(gam, nu3) * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
| ~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:939:27: note: 'Del' was declared here
939 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScrSM_Updates.c:1016:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1016 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScrSM_Updates.c:948:12: note: 'nu_lam' was declared here
948 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI1':
BpeDpCorScrSM_Updates.c:1833:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1833 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:1751:31: note: 'Del' was declared here
1751 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI2':
BpeDpCorScrSM_Updates.c:2422:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2422 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:2339:31: note: 'Del' was declared here
2339 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScrSM_Updates.c: In function 'BpeDpCorScrSM_updateDI3':
BpeDpCorScrSM_Updates.c:2998:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2998 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScrSM_Updates.c:2917:31: note: 'Del' was declared here
2917 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeDpCorScr_Updates.c -o BpeDpCorScr_Updates.o
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH1':
BpeDpCorScr_Updates.c:514:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
514 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH2':
BpeDpCorScr_Updates.c:746:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
746 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH3':
BpeDpCorScr_Updates.c:965:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
965 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH1':
BpeDpCorScr_Updates.c:577:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
577 | inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
| ~~~~~~^~~~~
BpeDpCorScr_Updates.c:505:27: note: 'Del' was declared here
505 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScr_Updates.c:587:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
587 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:514:12: note: 'nu_lam' was declared here
514 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH2':
BpeDpCorScr_Updates.c:804:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
804 | inc = - pow(gam, nu2) * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
| ~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:737:27: note: 'Del' was declared here
737 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScr_Updates.c:814:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
814 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:746:12: note: 'nu_lam' was declared here
746 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateBH3':
BpeDpCorScr_Updates.c:1026:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1026 | inc = - pow(gam, nu3) * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
| ~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:956:27: note: 'Del' was declared here
956 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeDpCorScr_Updates.c:1034:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1034 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorScr_Updates.c:965:12: note: 'nu_lam' was declared here
965 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI1':
BpeDpCorScr_Updates.c:1844:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1844 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:1763:31: note: 'Del' was declared here
1763 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI2':
BpeDpCorScr_Updates.c:2436:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2436 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:2352:31: note: 'Del' was declared here
2352 | double logLH, logLH_prop, Del;
| ^~~
BpeDpCorScr_Updates.c: In function 'BpeDpCorScr_updateDI3':
BpeDpCorScr_Updates.c:3021:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
3021 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeDpCorScr_Updates.c:2939:31: note: 'Del' was declared here
2939 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeDpCorSurv.c -o BpeDpCorSurv.o
BpeDpCorSurv.c: In function 'BpeDpCorSurvmcmc':
BpeDpCorSurv.c:233:37: warning: variable 'pCP' set but not used [-Wunused-but-set-variable]
233 | double pRP, pBH, pSP, pBI, pDI, pCP, choice;
| ^~~
BpeDpCorSurv.c:95:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
95 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeDpCorSurv.c:90:9: note: 'nP' was declared here
90 | int nP;
| ^~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeDpCorSurv_Updates.c -o BpeDpCorSurv_Updates.o
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateBH':
BpeDpCorSurv_Updates.c:186:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
186 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateCP':
BpeDpCorSurv_Updates.c:1261:18: warning: variable 'mu_temp' set but not used [-Wunused-but-set-variable]
1261 | double logR, mu_temp, zeta_temp;
| ^~~~~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateBH':
BpeDpCorSurv_Updates.c:244:19: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
244 | inc = - Del * exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i)+gsl_vector_get(V, jj));
| ^~~~~
BpeDpCorSurv_Updates.c:177:27: note: 'Del' was declared here
177 | double D1, D2, logLH, Del, inc;
| ^~~
BpeDpCorSurv_Updates.c:254:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
254 | D1 += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeDpCorSurv_Updates.c:186:12: note: 'nu_lam' was declared here
186 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeDpCorSurv_Updates.c: In function 'BpeDpCorSurv_updateDI':
BpeDpCorSurv_Updates.c:812:28: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
812 | logLH += - Del*exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i)+gsl_vector_get(V, jj));
| ^~~~~
BpeDpCorSurv_Updates.c:731:31: note: 'Del' was declared here
731 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeMvnCorScr.c -o BpeMvnCorScr.o
BpeMvnCorScr.c: In function 'BpeMvnCorScrmcmc':
BpeMvnCorScr.c:108:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
108 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:9: note: 'nP1' was declared here
99 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScr.c:109:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
109 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:14: note: 'nP2' was declared here
99 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScr.c:110:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
110 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:99:19: note: 'nP3' was declared here
99 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScr.c:551:98: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
551 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2+pDI3) move = 18;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr.c:418:96: note: 'pDI3' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:550:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
550 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr.c:418:90: note: 'pDI2' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:549:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
549 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr.c:418:84: note: 'pDI1' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:506:55: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:78: note: 'pBI3' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:506:48: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:72: note: 'pBI2' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:506:41: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
506 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScr.c:418:66: note: 'pBI1' was declared here
418 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScr.c:1003:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
1003 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScr.c:413:12: note: 'theta_mean' was declared here
413 | double theta_mean;
| ^~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeMvnCorScrSM.c -o BpeMvnCorScrSM.o
BpeMvnCorScrSM.c: In function 'BpeMvnCorScrSMmcmc':
BpeMvnCorScrSM.c:109:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
109 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:9: note: 'nP1' was declared here
100 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScrSM.c:110:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
110 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:14: note: 'nP2' was declared here
100 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScrSM.c:111:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
111 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:100:19: note: 'nP3' was declared here
100 | int nP1, nP2, nP3;
| ^~~
BpeMvnCorScrSM.c:601:98: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
601 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2+pDI3) move = 18;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM.c:456:96: note: 'pDI3' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:600:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
600 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM.c:456:90: note: 'pDI2' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:599:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
599 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM.c:456:84: note: 'pDI1' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:556:55: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:78: note: 'pBI3' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:556:48: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:72: note: 'pBI2' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:556:41: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
556 | double probSub = (1 - pMP - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-8);
| ~~~~~~~~~~~~~~^~~~~~
BpeMvnCorScrSM.c:456:66: note: 'pBI1' was declared here
456 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP;
| ^~~~
BpeMvnCorScrSM.c:1058:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
1058 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorScrSM.c:446:12: note: 'theta_mean' was declared here
446 | double theta_mean;
| ^~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeMvnCorScrSM_Updates.c -o BpeMvnCorScrSM_Updates.o
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH1':
BpeMvnCorScrSM_Updates.c:503:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
503 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH2':
BpeMvnCorScrSM_Updates.c:731:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
731 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH3':
BpeMvnCorScrSM_Updates.c:954:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
954 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH1':
BpeMvnCorScrSM_Updates.c:563:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
563 | inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
| ~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:494:27: note: 'Del' was declared here
494 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScrSM_Updates.c:573:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
573 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:503:12: note: 'nu_lam' was declared here
503 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH2':
BpeMvnCorScrSM_Updates.c:792:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
792 | inc = - pow(gam, nu2) * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
| ~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:722:27: note: 'Del' was declared here
722 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScrSM_Updates.c:802:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
802 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:731:12: note: 'nu_lam' was declared here
731 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateBH3':
BpeMvnCorScrSM_Updates.c:1014:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1014 | inc = - pow(gam, nu3) * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
| ~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:945:27: note: 'Del' was declared here
945 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScrSM_Updates.c:1023:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1023 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScrSM_Updates.c:954:12: note: 'nu_lam' was declared here
954 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI1':
BpeMvnCorScrSM_Updates.c:1833:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1833 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:1748:31: note: 'Del' was declared here
1748 | double logLH, logLH_prop, Del;
| ^~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI2':
BpeMvnCorScrSM_Updates.c:2425:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2425 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:2342:31: note: 'Del' was declared here
2342 | double logLH, logLH_prop, Del;
| ^~~
BpeMvnCorScrSM_Updates.c: In function 'BpeMvnCorScrSM_updateDI3':
BpeMvnCorScrSM_Updates.c:2996:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2996 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScrSM_Updates.c:2915:31: note: 'Del' was declared here
2915 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeMvnCorScr_Updates.c -o BpeMvnCorScr_Updates.o
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH1':
BpeMvnCorScr_Updates.c:503:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
503 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH2':
BpeMvnCorScr_Updates.c:732:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
732 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH3':
BpeMvnCorScr_Updates.c:955:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
955 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH1':
BpeMvnCorScr_Updates.c:563:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
563 | inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
| ~~~~~~^~~~~
BpeMvnCorScr_Updates.c:494:27: note: 'Del' was declared here
494 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScr_Updates.c:573:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
573 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:503:12: note: 'nu_lam' was declared here
503 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH2':
BpeMvnCorScr_Updates.c:793:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
793 | inc = - pow(gam, nu2) * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
| ~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:723:27: note: 'Del' was declared here
723 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScr_Updates.c:803:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
803 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:732:12: note: 'nu_lam' was declared here
732 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateBH3':
BpeMvnCorScr_Updates.c:1015:35: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1015 | inc = - pow(gam, nu3) * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
| ~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:946:27: note: 'Del' was declared here
946 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeMvnCorScr_Updates.c:1024:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1024 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorScr_Updates.c:955:12: note: 'nu_lam' was declared here
955 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI1':
BpeMvnCorScr_Updates.c:1850:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1850 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i)+gsl_vector_get(V1, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:1764:31: note: 'Del' was declared here
1764 | double logLH, logLH_prop, Del;
| ^~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI2':
BpeMvnCorScr_Updates.c:2461:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2461 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i)+gsl_vector_get(V2, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:2375:31: note: 'Del' was declared here
2375 | double logLH, logLH_prop, Del;
| ^~~
BpeMvnCorScr_Updates.c: In function 'BpeMvnCorScr_updateDI3':
BpeMvnCorScr_Updates.c:3058:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
3058 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i)+gsl_vector_get(V3, jj));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeMvnCorScr_Updates.c:2969:31: note: 'Del' was declared here
2969 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeMvnCorSurv.c -o BpeMvnCorSurv.o
BpeMvnCorSurv.c: In function 'BpeMvnCorSurvmcmc':
BpeMvnCorSurv.c:201:42: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
201 | double pRP, pBH, pSP, pBI, pDI, pCP, pVP, choice;
| ^~~
BpeMvnCorSurv.c:78:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
78 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeMvnCorSurv.c:73:9: note: 'nP' was declared here
73 | int nP;
| ^~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeMvnCorSurv_Updates.c -o BpeMvnCorSurv_Updates.o
BpeMvnCorSurv_Updates.c: In function 'BpeMvnCorSurv_updateBH':
BpeMvnCorSurv_Updates.c:181:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
181 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeMvnCorSurv_Updates.c:239:19: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
239 | inc = - Del * exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i)+gsl_vector_get(V, jj));
| ^~~~~
BpeMvnCorSurv_Updates.c:172:27: note: 'Del' was declared here
172 | double D1, D2, logLH, Del, inc;
| ^~~
BpeMvnCorSurv_Updates.c:249:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
249 | D1 += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeMvnCorSurv_Updates.c:181:12: note: 'nu_lam' was declared here
181 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeMvnCorSurv_Updates.c: In function 'BpeMvnCorSurv_updateDI':
BpeMvnCorSurv_Updates.c:822:28: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
822 | logLH += - Del*exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i)+gsl_vector_get(V, jj));
| ^~~~~
BpeMvnCorSurv_Updates.c:740:31: note: 'Del' was declared here
740 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeScr.c -o BpeScr.o
BpeScr.c: In function 'BpeScrmcmc':
BpeScr.c:91:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
91 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:9: note: 'nP1' was declared here
82 | int nP1, nP2, nP3;
| ^~~
BpeScr.c:92:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
92 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:14: note: 'nP2' was declared here
82 | int nP1, nP2, nP3;
| ^~~
BpeScr.c:93:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
93 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScr.c:82:19: note: 'nP3' was declared here
82 | int nP1, nP2, nP3;
| ^~~
BpeScr.c:398:70: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeScr.c:316:96: note: 'pDI3' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:432:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
432 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr.c:316:90: note: 'pDI2' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:431:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
431 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr.c:316:84: note: 'pDI1' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:398:49: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScr.c:316:78: note: 'pBI3' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:398:42: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~^~~~~~
BpeScr.c:316:72: note: 'pBI2' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScr.c:398:35: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
398 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~^~~~~~
BpeScr.c:316:66: note: 'pBI1' was declared here
316 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeScrSM.c -o BpeScrSM.o
BpeScrSM.c: In function 'BpeScrSMmcmc':
BpeScrSM.c:92:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
92 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:9: note: 'nP1' was declared here
83 | int nP1, nP2, nP3;
| ^~~
BpeScrSM.c:93:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
93 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:14: note: 'nP2' was declared here
83 | int nP1, nP2, nP3;
| ^~~
BpeScrSM.c:94:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
94 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BpeScrSM.c:83:19: note: 'nP3' was declared here
83 | int nP1, nP2, nP3;
| ^~~
BpeScrSM.c:408:70: warning: 'pDI3' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
BpeScrSM.c:326:96: note: 'pDI3' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:442:93: warning: 'pDI2' may be used uninitialized [-Wmaybe-uninitialized]
442 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1+pDI2) move = 17;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM.c:326:90: note: 'pDI2' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:441:88: warning: 'pDI1' may be used uninitialized [-Wmaybe-uninitialized]
441 | if(choice > pRP1+pRP2+pRP3+pBH1+pBH2+pBH3+pSP1+pSP2+pSP3+pFP+pDP+pBI1+pBI2+pBI3+pDI1) move = 16;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM.c:326:84: note: 'pDI1' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:408:49: warning: 'pBI3' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
BpeScrSM.c:326:78: note: 'pBI3' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:408:42: warning: 'pBI2' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~~~~~~~~^~~~~~
BpeScrSM.c:326:72: note: 'pBI2' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
BpeScrSM.c:408:35: warning: 'pBI1' may be used uninitialized [-Wmaybe-uninitialized]
408 | double probSub = (1 - pDP - pBI1 - pBI2 - pBI3 - pDI1 - pDI2 - pDI3)/(numUpdate-7);
| ~~~~~~~~^~~~~~
BpeScrSM.c:326:66: note: 'pBI1' was declared here
326 | double pRP1, pRP2, pRP3, pBH1, pBH2, pBH3, pSP1, pSP2, pSP3, pBI1, pBI2, pBI3, pDI1, pDI2, pDI3, pFP, pDP, choice;
| ^~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeScrSM_Updates.c -o BpeScrSM_Updates.o
BpeScrSM_Updates.c: In function 'BscrSM_updateBH1':
BpeScrSM_Updates.c:519:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
519 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH2':
BpeScrSM_Updates.c:728:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
728 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH3':
BpeScrSM_Updates.c:949:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
949 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH1':
BpeScrSM_Updates.c:578:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
578 | inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i));
| ~~~~~~^~~~~
BpeScrSM_Updates.c:510:27: note: 'Del' was declared here
510 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScrSM_Updates.c:588:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
588 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScrSM_Updates.c:519:12: note: 'nu_lam' was declared here
519 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateBH2':
BpeScrSM_Updates.c:785:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
785 | inc = - gam * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i));
| ~~~~~~^~~~~
BpeScrSM_Updates.c:719:27: note: 'Del' was declared here
719 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScrSM_Updates.c:795:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
795 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScrSM_Updates.c:728:12: note: 'nu_lam' was declared here
728 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI1':
BpeScrSM_Updates.c:1842:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1842 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM_Updates.c:1760:31: note: 'Del' was declared here
1760 | double logLH, logLH_prop, Del;
| ^~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI2':
BpeScrSM_Updates.c:2380:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2380 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM_Updates.c:2298:31: note: 'Del' was declared here
2298 | double logLH, logLH_prop, Del;
| ^~~
BpeScrSM_Updates.c: In function 'BscrSM_updateDI3':
BpeScrSM_Updates.c:2918:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2918 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScrSM_Updates.c:2837:31: note: 'Del' was declared here
2837 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeScr_Updates.c -o BpeScr_Updates.o
BpeScr_Updates.c: In function 'Bscr_updateBH1':
BpeScr_Updates.c:520:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
520 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH2':
BpeScr_Updates.c:736:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
736 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH3':
BpeScr_Updates.c:958:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
958 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH1':
BpeScr_Updates.c:579:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
579 | inc = - gam * Del * exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i));
| ~~~~~~^~~~~
BpeScr_Updates.c:511:27: note: 'Del' was declared here
511 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScr_Updates.c:589:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
589 | D1 += -1/(sigSq_lam1 * gsl_matrix_get(Q1, j, j))*(gsl_vector_get(lambda1, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:520:12: note: 'nu_lam' was declared here
520 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH2':
BpeScr_Updates.c:794:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
794 | inc = - gam * Del * exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i));
| ~~~~~~^~~~~
BpeScr_Updates.c:727:27: note: 'Del' was declared here
727 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScr_Updates.c:804:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
804 | D1 += -1/(sigSq_lam2 * gsl_matrix_get(Q2, j, j))*(gsl_vector_get(lambda2, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:736:12: note: 'nu_lam' was declared here
736 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScr_Updates.c: In function 'Bscr_updateBH3':
BpeScr_Updates.c:1017:25: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1017 | inc = - gam * Del * exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i));
| ~~~~~~^~~~~
BpeScr_Updates.c:949:27: note: 'Del' was declared here
949 | double D1, D2, logLH, Del, inc, gam;
| ^~~
BpeScr_Updates.c:1027:86: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
1027 | D1 += -1/(sigSq_lam3 * gsl_matrix_get(Q3, j, j))*(gsl_vector_get(lambda3, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeScr_Updates.c:958:12: note: 'nu_lam' was declared here
958 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeScr_Updates.c: In function 'Bscr_updateDI1':
BpeScr_Updates.c:1863:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1863 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda1, j))*exp(gsl_vector_get(xbeta1, i));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr_Updates.c:1779:31: note: 'Del' was declared here
1779 | double logLH, logLH_prop, Del;
| ^~~
BpeScr_Updates.c: In function 'Bscr_updateDI2':
BpeScr_Updates.c:2423:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2423 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda2, j))*exp(gsl_vector_get(xbeta2, i));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr_Updates.c:2340:31: note: 'Del' was declared here
2340 | double logLH, logLH_prop, Del;
| ^~~
BpeScr_Updates.c: In function 'Bscr_updateDI3':
BpeScr_Updates.c:2964:55: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
2964 | logLH += - gsl_vector_get(gamma, i) * Del*exp(gsl_vector_get(lambda3, j))*exp(gsl_vector_get(xbeta3, i));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
BpeScr_Updates.c:2883:31: note: 'Del' was declared here
2883 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeSurv.c -o BpeSurv.o
BpeSurv.c: In function 'BpeSurvmcmc':
BpeSurv.c:64:27: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
64 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BpeSurv.c:59:9: note: 'nP' was declared here
59 | int nP;
| ^~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BpeSurv_Updates.c -o BpeSurv_Updates.o
BpeSurv_Updates.c: In function 'BpeSur_updateBH2':
BpeSurv_Updates.c:313:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
313 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateBH1':
BpeSurv_Updates.c:518:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
518 | double nu_lam, nu_lam_prop;
| ^~~~~~~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateBH2':
BpeSurv_Updates.c:366:19: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
366 | inc = - Del*exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i));
| ^~~~~
BpeSurv_Updates.c:304:27: note: 'Del' was declared here
304 | double D1, D2, logLH, Del, inc;
| ^~~
BpeSurv_Updates.c:374:83: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
374 | D1 += -1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeSurv_Updates.c:313:12: note: 'nu_lam' was declared here
313 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateBH1':
BpeSurv_Updates.c:552:108: warning: 'nu_lam' may be used uninitialized [-Wmaybe-uninitialized]
552 | D1 += gsl_vector_get(nEvent, j)-1/(sigSq_lam * gsl_matrix_get(Q, j, j))*(gsl_vector_get(lambda, j)-nu_lam);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BpeSurv_Updates.c:518:12: note: 'nu_lam' was declared here
518 | double nu_lam, nu_lam_prop;
| ^~~~~~
BpeSurv_Updates.c: In function 'BpeSur_updateDI2':
BpeSurv_Updates.c:1362:28: warning: 'Del' may be used uninitialized [-Wmaybe-uninitialized]
1362 | logLH += - Del*exp(gsl_vector_get(lambda, j))*exp(gsl_vector_get(xbeta, i));
| ^~~~~
BpeSurv_Updates.c:1283:31: note: 'Del' was declared here
1283 | double logLH, logLH_prop, Del;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibCorSurv.c -o BweibCorSurv.o
BweibCorSurv.c: In function 'BweibCorSurvmcmc':
BweibCorSurv.c:144:32: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
144 | double pRP, pSH, pSC, pCP, pVP, choice;
| ^~~
BweibCorSurv.c:71:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
71 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibCorSurv.c:66:9: note: 'nP' was declared here
66 | int nP;
| ^~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibCorSurv_Updates.c -o BweibCorSurv_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibDpCorScr.c -o BweibDpCorScr.o
BweibDpCorScr.c: In function 'BweibDpCorScrmcmc':
BweibDpCorScr.c:118:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
118 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:9: note: 'nP1' was declared here
109 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScr.c:119:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
119 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:14: note: 'nP2' was declared here
109 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScr.c:120:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
120 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:109:19: note: 'nP3' was declared here
109 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScr.c:745:24: warning: 'theta_mean' may be used uninitialized [-Wmaybe-uninitialized]
745 | theta_mean = ((double) StoreInx - 1) * theta_mean;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:348:12: note: 'theta_mean' was declared here
348 | double theta_mean;
| ^~~~~~~~~~
BweibDpCorScr.c:741:25: warning: 'kappa3_mean' may be used uninitialized [-Wmaybe-uninitialized]
741 | kappa3_mean = ((double) StoreInx - 1) * kappa3_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:38: note: 'kappa3_mean' was declared here
346 | double kappa1_mean, kappa2_mean, kappa3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:737:25: warning: 'kappa2_mean' may be used uninitialized [-Wmaybe-uninitialized]
737 | kappa2_mean = ((double) StoreInx - 1) * kappa2_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:25: note: 'kappa2_mean' was declared here
346 | double kappa1_mean, kappa2_mean, kappa3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:733:25: warning: 'kappa1_mean' may be used uninitialized [-Wmaybe-uninitialized]
733 | kappa1_mean = ((double) StoreInx - 1) * kappa1_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:346:12: note: 'kappa1_mean' was declared here
346 | double kappa1_mean, kappa2_mean, kappa3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:729:25: warning: 'alpha3_mean' may be used uninitialized [-Wmaybe-uninitialized]
729 | alpha3_mean = ((double) StoreInx - 1) * alpha3_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:38: note: 'alpha3_mean' was declared here
345 | double alpha1_mean, alpha2_mean, alpha3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:725:25: warning: 'alpha2_mean' may be used uninitialized [-Wmaybe-uninitialized]
725 | alpha2_mean = ((double) StoreInx - 1) * alpha2_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:25: note: 'alpha2_mean' was declared here
345 | double alpha1_mean, alpha2_mean, alpha3_mean;
| ^~~~~~~~~~~
BweibDpCorScr.c:721:25: warning: 'alpha1_mean' may be used uninitialized [-Wmaybe-uninitialized]
721 | alpha1_mean = ((double) StoreInx - 1) * alpha1_mean;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScr.c:345:12: note: 'alpha1_mean' was declared here
345 | double alpha1_mean, alpha2_mean, alpha3_mean;
| ^~~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibDpCorScrSM.c -o BweibDpCorScrSM.o
BweibDpCorScrSM.c: In function 'BweibDpCorScrSMmcmc':
BweibDpCorScrSM.c:120:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
120 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:9: note: 'nP1' was declared here
111 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScrSM.c:121:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
121 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:14: note: 'nP2' was declared here
111 | int nP1, nP2, nP3;
| ^~~
BweibDpCorScrSM.c:122:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
122 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorScrSM.c:111:19: note: 'nP3' was declared here
111 | int nP1, nP2, nP3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibDpCorScrSM_Updates.c -o BweibDpCorScrSM_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibDpCorScr_Updates.c -o BweibDpCorScr_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibDpCorSurv.c -o BweibDpCorSurv.o
BweibDpCorSurv.c: In function 'BweibDpCorSurvmcmc':
BweibDpCorSurv.c:88:31: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
88 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibDpCorSurv.c:83:9: note: 'nP' was declared here
83 | int nP;
| ^~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibDpCorSurv_Updates.c -o BweibDpCorSurv_Updates.o
BweibDpCorSurv_Updates.c: In function 'BweibDpCorSurv_updateCP':
BweibDpCorSurv_Updates.c:553:18: warning: variable 'mu_temp' set but not used [-Wunused-but-set-variable]
553 | double logR, mu_temp, zeta_temp;
| ^~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibMvnCorScr.c -o BweibMvnCorScr.o
BweibMvnCorScr.c: In function 'BweibMvnCorScrmcmc':
BweibMvnCorScr.c:320:99: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
320 | double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, pMP, pCP1, pCP2, pCP3, pVP, choice;
| ^~~
BweibMvnCorScr.c:102:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
102 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:9: note: 'nP1' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScr.c:103:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
103 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:14: note: 'nP2' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScr.c:104:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
104 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScr.c:93:19: note: 'nP3' was declared here
93 | int nP1, nP2, nP3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibMvnCorScrSM.c -o BweibMvnCorScrSM.o
BweibMvnCorScrSM.c: In function 'BweibMvnCorScrSMmcmc':
BweibMvnCorScrSM.c:335:99: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
335 | double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, pMP, pCP1, pCP2, pCP3, pVP, choice;
| ^~~
BweibMvnCorScrSM.c:102:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
102 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:9: note: 'nP1' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScrSM.c:103:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
103 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:14: note: 'nP2' was declared here
93 | int nP1, nP2, nP3;
| ^~~
BweibMvnCorScrSM.c:104:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
104 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibMvnCorScrSM.c:93:19: note: 'nP3' was declared here
93 | int nP1, nP2, nP3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibMvnCorScrSM_Updates.c -o BweibMvnCorScrSM_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibMvnCorScr_Updates.c -o BweibMvnCorScr_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibScr.c -o BweibScr.o
BweibScr.c: In function 'BweibScrmcmc':
BweibScr.c:231:71: warning: variable 'pFP' set but not used [-Wunused-but-set-variable]
231 | double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, choice;
| ^~~
BweibScr.c:85:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
85 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:9: note: 'nP1' was declared here
76 | int nP1, nP2, nP3;
| ^~~
BweibScr.c:86:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
86 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:14: note: 'nP2' was declared here
76 | int nP1, nP2, nP3;
| ^~~
BweibScr.c:87:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
87 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScr.c:76:19: note: 'nP3' was declared here
76 | int nP1, nP2, nP3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibScrSM.c -o BweibScrSM.o
BweibScrSM.c: In function 'BweibScrSMmcmc':
BweibScrSM.c:237:71: warning: variable 'pFP' set but not used [-Wunused-but-set-variable]
237 | double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, choice;
| ^~~
BweibScrSM.c:85:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
85 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:9: note: 'nP1' was declared here
76 | int nP1, nP2, nP3;
| ^~~
BweibScrSM.c:86:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
86 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:14: note: 'nP2' was declared here
76 | int nP1, nP2, nP3;
| ^~~
BweibScrSM.c:87:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
87 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
BweibScrSM.c:76:19: note: 'nP3' was declared here
76 | int nP1, nP2, nP3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibScrSM_Updates.c -o BweibScrSM_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibScr_Updates.c -o BweibScr_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibSurv.c -o BweibSurv.o
BweibSurv.c: In function 'BweibSurvmcmc':
BweibSurv.c:109:22: warning: variable 'pSC' set but not used [-Wunused-but-set-variable]
109 | double pRP, pSH, pSC, choice;
| ^~~
BweibSurv.c:62:27: warning: 'nP' may be used uninitialized [-Wmaybe-uninitialized]
62 | gsl_matrix *survCov = gsl_matrix_calloc(*n, nP);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
BweibSurv.c:57:9: note: 'nP' was declared here
57 | int nP;
| ^~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BweibSurv_Updates.c -o BweibSurv_Updates.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Utilities.c -o Utilities.o
Utilities.c: In function 'log_fg_BAFT_DP':
Utilities.c:6029:64: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
6029 | double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
| ^~~~
Utilities.c:6029:58: warning: variable 'logk' set but not used [-Wunused-but-set-variable]
6029 | double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
| ^~~~
Utilities.c:6029:52: warning: variable 'log1' set but not used [-Wunused-but-set-variable]
6029 | double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
| ^~~~
Utilities.c: In function 'log_Jpdf_Upper_BAFT_LN':
Utilities.c:6382:35: warning: variable 'y2_temp' set but not used [-Wunused-but-set-variable]
6382 | double eta1, eta2, eta3, gam, y2_temp;
| ^~~~~~~
Utilities.c: In function 'c_multinom_sample':
Utilities.c:3487:5: warning: '<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
3487 | gsl_ran_multinomial(rr, KK, 1, probK, samples);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from Utilities.c:14:
d:\rtools43\x86_64-w64-mingw32.static.posix\include\gsl\gsl_randist.h:154:6: note: by argument 4 of type 'const double[]' to 'gsl_ran_multinomial' declared here
154 | void gsl_ran_multinomial (const gsl_rng * r, const size_t K,
| ^~~~~~~~~~~~~~~~~~~
Utilities.c:3494:12: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
3494 | return val;
| ^~~
Utilities.c:3476:13: note: 'val' was declared here
3476 | int ii, val;
| ^~~
Utilities.c: In function 'BweibMvnCorScr_logMLH_DIC':
Utilities.c:6630:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
6630 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:9: note: 'nP1' was declared here
6621 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6631:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
6631 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:14: note: 'nP2' was declared here
6621 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6632:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
6632 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6621:19: note: 'nP3' was declared here
6621 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BweibMvnCorScrSM_logMLH_DIC':
Utilities.c:6813:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
6813 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:9: note: 'nP1' was declared here
6804 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6814:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
6814 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:14: note: 'nP2' was declared here
6804 | int nP1, nP2, nP3;
| ^~~
Utilities.c:6815:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
6815 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:6804:19: note: 'nP3' was declared here
6804 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BpeMvnCorScr_logMLH_DIC':
Utilities.c:7364:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
7364 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:9: note: 'nP1' was declared here
7355 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7365:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
7365 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:14: note: 'nP2' was declared here
7355 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7366:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
7366 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7355:19: note: 'nP3' was declared here
7355 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BpeMvnCorScrSM_logMLH_DIC':
Utilities.c:7595:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
7595 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:9: note: 'nP1' was declared here
7586 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7596:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
7596 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:14: note: 'nP2' was declared here
7586 | int nP1, nP2, nP3;
| ^~~
Utilities.c:7597:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
7597 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:7586:19: note: 'nP3' was declared here
7586 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BweibScr_logMLH_DIC':
Utilities.c:8450:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
8450 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:9: note: 'nP1' was declared here
8441 | int nP1, nP2, nP3;
| ^~~
Utilities.c:8451:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
8451 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:14: note: 'nP2' was declared here
8441 | int nP1, nP2, nP3;
| ^~~
Utilities.c:8452:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
8452 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8441:19: note: 'nP3' was declared here
8441 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BweibScrSM_logMLH_DIC':
Utilities.c:8619:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
8619 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:9: note: 'nP1' was declared here
8610 | int nP1, nP2, nP3;
| ^~~
Utilities.c:8620:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
8620 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:14: note: 'nP2' was declared here
8610 | int nP1, nP2, nP3;
| ^~~
Utilities.c:8621:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
8621 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:8610:19: note: 'nP3' was declared here
8610 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BpeScr_logMLH_DIC':
Utilities.c:9128:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
9128 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:9: note: 'nP1' was declared here
9119 | int nP1, nP2, nP3;
| ^~~
Utilities.c:9129:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
9129 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:14: note: 'nP2' was declared here
9119 | int nP1, nP2, nP3;
| ^~~
Utilities.c:9130:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
9130 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9119:19: note: 'nP3' was declared here
9119 | int nP1, nP2, nP3;
| ^~~
Utilities.c: In function 'BpeScrSM_logMLH_DIC':
Utilities.c:9709:32: warning: 'nP1' may be used uninitialized [-Wmaybe-uninitialized]
9709 | gsl_matrix *survCov1 = gsl_matrix_calloc(*n, nP1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:9: note: 'nP1' was declared here
9700 | int nP1, nP2, nP3;
| ^~~
Utilities.c:9710:32: warning: 'nP2' may be used uninitialized [-Wmaybe-uninitialized]
9710 | gsl_matrix *survCov2 = gsl_matrix_calloc(*n, nP2);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:14: note: 'nP2' was declared here
9700 | int nP1, nP2, nP3;
| ^~~
Utilities.c:9711:32: warning: 'nP3' may be used uninitialized [-Wmaybe-uninitialized]
9711 | gsl_matrix *survCov3 = gsl_matrix_calloc(*n, nP3);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
Utilities.c:9700:19: note: 'nP3' was declared here
9700 | int nP1, nP2, nP3;
| ^~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc -shared -s -static-libgcc -o SemiCompRisks.dll tmp.def BAFT_DPscr.o BAFT_DPscr_Updates.o BAFT_DPsurv.o BAFT_DPsurv_Updates.o BAFT_LNscr.o BAFT_LNscr_Updates.o BAFT_LNsurv.o BAFT_LNsurv_Updates.o BpeDpCorScr.o BpeDpCorScrSM.o BpeDpCorScrSM_Updates.o BpeDpCorScr_Updates.o BpeDpCorSurv.o BpeDpCorSurv_Updates.o BpeMvnCorScr.o BpeMvnCorScrSM.o BpeMvnCorScrSM_Updates.o BpeMvnCorScr_Updates.o BpeMvnCorSurv.o BpeMvnCorSurv_Updates.o BpeScr.o BpeScrSM.o BpeScrSM_Updates.o BpeScr_Updates.o BpeSurv.o BpeSurv_Updates.o BweibCorSurv.o BweibCorSurv_Updates.o BweibDpCorScr.o BweibDpCorScrSM.o BweibDpCorScrSM_Updates.o BweibDpCorScr_Updates.o BweibDpCorSurv.o BweibDpCorSurv_Updates.o BweibMvnCorScr.o BweibMvnCorScrSM.o BweibMvnCorScrSM_Updates.o BweibMvnCorScr_Updates.o BweibScr.o BweibScrSM.o BweibScrSM_Updates.o BweibScr_Updates.o BweibSurv.o BweibSurv_Updates.o Utilities.o registerDynamicSymbol.o -L/usr/local/lib -lgsl -lgslcblas -lm -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_20_01_50_00_19051/RtmpWgOk0R/R.INSTALL2c654192d7b55/SemiCompRisks/src'
make[1]: Entering directory '/d/temp/2024_12_20_01_50_00_19051/RtmpWgOk0R/R.INSTALL2c654192d7b55/SemiCompRisks/src'
make[1]: Leaving directory '/d/temp/2024_12_20_01_50_00_19051/RtmpWgOk0R/R.INSTALL2c654192d7b55/SemiCompRisks/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-SemiCompRisks/00new/SemiCompRisks/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SemiCompRisks' as SemiCompRisks_3.4.zip
* DONE (SemiCompRisks)