* installing *source* package 'BoolNet' ...
** package 'BoolNet' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/2025_02_05_01_50_00_8875/Rtmp4gsifP/R.INSTALL83e439d2b40/BoolNet/src'
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c attractor_info.c -o attractor_info.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c attractor_search_interface.c -o attractor_search_interface.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c common.c -o common.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c picosat.c -o picosat.o
picosat.c: In function 'relemhead':
picosat.c:3263:15: warning: variable 'fmt' set but not used [-Wunused-but-set-variable]
3263 | const char *fmt;
| ^~~
picosat.c: In function 'fanalyze':
picosat.c:3776:10: warning: unused variable 'start' [-Wunused-variable]
3776 | double start = picosat_time_stamp ();
| ^~~~~
picosat.c: In function 'picosat_mus_assumptions':
picosat.c:7377:24: warning: unused variable 'norig' [-Wunused-variable]
7377 | int i, j, ilit, len, norig = ps->alshead - ps->als, nwork, * work, res;
| ^~~~~
picosat.c: In function 'picosat_stats':
picosat.c:7991:12: warning: variable 'redlits' set but not used [-Wunused-but-set-variable]
7991 | unsigned redlits;
| ^~~~~~~
picosat.c: At top level:
picosat.c:6967:21: warning: 'enumstr' defined but not used [-Wunused-function]
6967 | static const char * enumstr (int i) {
| ^~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c probabilistic_boolean_network.c -o probabilistic_boolean_network.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c reconstruct_network.c -o reconstruct_network.o
reconstruct_network.c: In function 'reconstructNetwork_R':
reconstruct_network.c:1069:11: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
1069 | else
| ^~~~
reconstruct_network.c:1074:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
1074 | SETCADR(entrySXP,funcSXP);
| ^~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sat_search.c -o sat_search.o
In file included from common.h:7,
from sat_search.c:8:
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
uthash.h:566:30: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
566 | #define HASH_KEYCMP(a,b,len) memcmp(a,b,len)
| ^
uthash.h:575:14: note: in expansion of macro 'HASH_KEYCMP'
575 | if ((HASH_KEYCMP(out->hh.key,keyptr,keylen_in)) == 0) break; \
| ^~~~~~~~~~~
uthash.h:92:8: note: in expansion of macro 'HASH_FIND_IN_BKT'
92 | HASH_FIND_IN_BKT((head)->hh.tbl, hh, (head)->hh.tbl->buckets[ _hf_bkt ], \
| ^~~~~~~~~~~~~~~~
uthash.h:241:5: note: in expansion of macro 'HASH_FIND'
241 | HASH_FIND(hh,head,findptr,sizeof(void *),out)
| ^~~~~~~~~
common.h:100:5: note: in expansion of macro 'HASH_FIND_PTR'
100 | HASH_FIND_PTR(memoryMap, &ptr, m);
| ^~~~~~~~~~~~~
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
sat_search.c: In function 'SATRealloc':
sat_search.c:85:1: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
85 | }
| ^
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
sat_search.c: In function 'SATRealloc':
sat_search.c:85:1: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
85 | }
| ^
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
sat_search.c: In function 'SATRealloc':
sat_search.c:85:1: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
85 | }
| ^
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
sat_search.c: In function 'SATRealloc':
sat_search.c:85:1: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
85 | }
| ^
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
sat_search.c: In function 'SATRealloc':
sat_search.c:85:1: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
85 | }
| ^
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
sat_search.c: In function 'SATRealloc':
sat_search.c:85:1: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
85 | }
| ^
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
sat_search.c: In function 'SATRealloc':
sat_search.c:85:1: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
85 | }
| ^
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
sat_search.c: In function 'SATRealloc':
sat_search.c:85:1: warning: pointer 'ptr' may be used after 'realloc' [-Wuse-after-free]
85 | }
| ^
In function 'REALLOC',
inlined from 'SATRealloc' at sat_search.c:84:9:
common.h:92:19: note: call to 'realloc' here
92 | void * newptr = realloc(ptr, new_sz);
| ^~~~~~~~~~~~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c statespace_search.c -o statespace_search.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c symbolic_network.c -o symbolic_network.o
gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DNGETRUSAGE -DNALLSIGNALS -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c symbolic_simulator.c -o symbolic_simulator.o
gcc -shared -s -static-libgcc -o BoolNet.dll tmp.def attractor_info.o attractor_search_interface.o common.o init.o picosat.o probabilistic_boolean_network.o reconstruct_network.o sat_search.o statespace_search.o symbolic_network.o symbolic_simulator.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_02_05_01_50_00_8875/Rtmp4gsifP/R.INSTALL83e439d2b40/BoolNet/src'
make[1]: Entering directory '/d/temp/2025_02_05_01_50_00_8875/Rtmp4gsifP/R.INSTALL83e439d2b40/BoolNet/src'
make[1]: Leaving directory '/d/temp/2025_02_05_01_50_00_8875/Rtmp4gsifP/R.INSTALL83e439d2b40/BoolNet/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-BoolNet/00new/BoolNet/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BoolNet' as BoolNet_2.1.9.zip
* DONE (BoolNet)