* installing *source* package ‘zoomerjoin’ ...
** package ‘zoomerjoin’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
rm -Rf zoomerjoin.so ./rust/target/release/libzoomerjoin.a entrypoint.o /Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/vendor
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo && \
cp rust/vendor-config.toml /Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo/config.toml; \
fi
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo; \
fi && \
export PATH="/opt/gfortran/bin:/opt/R/x86_64/bin:/Library/TeX/texbin:/usr/texbin:/opt/R/x86_64/gfortran/bin:/usr/local/bin:/usr/local/gfortran/bin:/usr/local/teTeX/bin/x86_64-apple-darwin-current:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
echo `cargo --version` && echo `rustc --version` && \
cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target;
cargo 1.70.0 (ec8a8a0ca 2023-04-25)
rustc 1.70.0 (90c541806 2023-05-31)
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling autocfg v1.1.0
Compiling cfg-if v1.0.0
Compiling libc v0.2.151
Compiling crossbeam-utils v0.8.16
Compiling libm v0.2.8
Compiling scopeguard v1.2.0
Compiling rayon-core v1.12.0
Compiling proc-macro2 v1.0.70
Compiling memoffset v0.9.0
Compiling num-traits v0.2.17
Compiling crossbeam-epoch v0.9.15
Compiling num-integer v0.1.45
Compiling matrixmultiply v0.3.8
Compiling getrandom v0.2.11
Compiling unicode-ident v1.0.12
Compiling either v1.9.0
Compiling rand_core v0.6.4
Compiling libR-sys v0.7.0
Compiling ppv-lite86 v0.2.17
Compiling crossbeam-deque v0.8.3
Compiling rawpointer v0.2.1
Compiling rand_chacha v0.3.1
Compiling quote v1.0.33
Compiling rayon v1.8.0
Compiling lock_api v0.4.11
Compiling parking_lot_core v0.9.9
Compiling paste v1.0.14
Compiling num-complex v0.4.4
Compiling rand v0.8.5
Compiling syn v2.0.41
Compiling smallvec v1.11.2
Compiling once_cell v1.19.0
Compiling extendr-api v0.7.0
Compiling rand_distr v0.4.3
Compiling ndarray v0.15.6
error[E0428]: the name `R_altrep_Coerce_method_t` is defined multiple times
--> /Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/./rust/target/release/build/libR-sys-de9b16e0a549bbcb/out/bindings.rs:594:1
|
594 | / pub type R_altrep_Coerce_method_t =
595 | | ::std::option::Option<unsafe extern "C" fn(arg1: SEXP, arg2: ::std::os::raw::c_int) -> SEXP>;
| |_________________________________________________________________________________________________^ `R_altrep_Coerce_method_t` redefined here
|
::: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/vendor/libR-sys/src/lib.rs:80:1
|
80 | / pub type R_altrep_Coerce_method_t =
81 | | ::std::option::Option<unsafe extern "C" fn(arg1: SEXP, arg2: SEXPTYPE) -> SEXP>;
| |____________________________________________________________________________________- previous definition of the type `R_altrep_Coerce_method_t` here
|
= note: `R_altrep_Coerce_method_t` must be defined only once in the type namespace of this module
error[E0428]: the name `Rf_isS4` is defined multiple times
--> /Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/./rust/target/release/build/libR-sys-de9b16e0a549bbcb/out/bindings.rs:1733:5
|
1733 | pub fn Rf_isS4(arg1: SEXP) -> Rboolean;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `Rf_isS4` redefined here
|
::: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/vendor/libR-sys/src/lib.rs:83:1
|
83 | pub unsafe fn Rf_isS4(arg1: SEXP) -> Rboolean {
| --------------------------------------------- previous definition of the value `Rf_isS4` here
|
= note: `Rf_isS4` must be defined only once in the value namespace of this module
Compiling hashbrown v0.14.3
For more information about this error, try `rustc --explain E0428`.
error: could not compile `libR-sys` (lib) due to 2 previous errors
warning: build failed, waiting for other jobs to finish...
make: *** [rust/target/release/libzoomerjoin.a] Error 101
ERROR: compilation failed for package ‘zoomerjoin’
* removing ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/zoomerjoin.Rcheck/zoomerjoin’