* installing *source* package ‘tok’ ...
** package ‘tok’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
rm -Rf tok.so ./rust/target/release/libtok.a entrypoint.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "yes" = "yes" ]; then \
/usr/bin/tar --extract --xz -f ./rust/vendor.tar.xz -C ./rust && \
mkdir -p ./rust/.cargo; \
fi
export PATH="/opt/gfortran/bin:/opt/R/x86_64/bin:/Library/TeX/texbin:/usr/texbin:/opt/R/x86_64/gfortran/bin:/usr/local/bin:/usr/local/gfortran/bin:/usr/local/teTeX/bin/x86_64-apple-darwin-current:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
if [ "" != "true" ]; then \
export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.3/tok.Rcheck/00_pkg_src/tok/src/.cargo; \
fi && \
cargo build --lib --release --offline --config rust/config/cargo-config.toml --manifest-path=./rust/Cargo.toml --target-dir ./rust/target --jobs 1
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.86
Compiling unicode-ident v1.0.6
Compiling libc v0.2.155
Compiling syn v1.0.107
Compiling memchr v2.7.4
Compiling crossbeam-utils v0.8.20
Compiling cc v1.0.100
Compiling strsim v0.10.0
Compiling fnv v1.0.7
Compiling ident_case v1.0.1
Compiling serde v1.0.203
Compiling quote v1.0.36
Compiling paste v1.0.11
Compiling syn v2.0.68
Compiling crossbeam-epoch v0.9.18
Compiling cfg-if v1.0.0
Compiling pkg-config v0.3.30
Compiling either v1.12.0
Compiling rayon-core v1.12.1
Compiling crossbeam-deque v0.8.5
Compiling onig_sys v69.8.1
Compiling getrandom v0.2.15
Compiling aho-corasick v1.1.3
Compiling libR-sys v0.7.0
Compiling regex-syntax v0.8.4
Compiling rand_core v0.6.4
Compiling regex-automata v0.4.7
Compiling darling_core v0.14.4
Compiling serde_derive v1.0.203
Compiling esaxx-rs v0.1.10
Compiling serde_json v1.0.118
Compiling minimal-lexical v0.2.1
Compiling unicode-width v0.1.13
Compiling lazy_static v1.4.0
Compiling thiserror v1.0.61
Compiling ppv-lite86 v0.2.17
Compiling darling_macro v0.14.4
Compiling darling v0.14.4
Compiling once_cell v1.19.0
Compiling rand_chacha v0.3.1
Compiling derive_builder_core v0.12.0
Compiling console v0.15.8
Compiling nom v7.1.3
Compiling derive_builder_macro v0.12.0
Compiling monostate-impl v0.1.13
Compiling thiserror-impl v1.0.61
Compiling regex v1.10.5
Compiling rayon v1.10.0
Compiling itertools v0.8.2
Compiling number_prefix v0.3.0
Compiling itoa v1.0.11
Compiling ryu v1.0.18
Compiling macro_rules_attribute-proc_macro v0.1.3
Compiling base64 v0.13.1
Compiling smallvec v1.13.2
Compiling bitflags v1.3.2
Compiling unicode-segmentation v1.11.0
Compiling extendr-api v0.7.0
Compiling unicode-normalization-alignments v0.1.12
Compiling onig v6.4.0
Compiling macro_rules_attribute v0.1.3
Compiling indicatif v0.15.0
Compiling monostate v0.1.13
Compiling spm_precompiled v0.1.4
Compiling rayon-cond v0.1.0
Compiling derive_builder v0.12.0
Compiling rand v0.8.5
Compiling extendr-macros v0.7.0
error[E0428]: the name `R_altrep_Coerce_method_t` is defined multiple times
--> /Volumes/Builds/packages/big-sur-x86_64/results/4.3/tok.Rcheck/00_pkg_src/tok/src/./rust/target/release/build/libR-sys-de9b16e0a549bbcb/out/bindings.rs:594:1
|
594 | / pub type R_altrep_Coerce_method_t =
595 | | ::std::option::Option<unsafe extern "C" fn(arg1: SEXP, arg2: ::std::os::raw::c_int) -> SEXP>;
| |_________________________________________________________________________________________________^ `R_altrep_Coerce_method_t` redefined here
|
::: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/tok.Rcheck/00_pkg_src/tok/src/rust/vendor/libR-sys/src/lib.rs:80:1
|
80 | / pub type R_altrep_Coerce_method_t =
81 | | ::std::option::Option<unsafe extern "C" fn(arg1: SEXP, arg2: SEXPTYPE) -> SEXP>;
| |____________________________________________________________________________________- previous definition of the type `R_altrep_Coerce_method_t` here
|
= note: `R_altrep_Coerce_method_t` must be defined only once in the type namespace of this module
error[E0428]: the name `Rf_isS4` is defined multiple times
--> /Volumes/Builds/packages/big-sur-x86_64/results/4.3/tok.Rcheck/00_pkg_src/tok/src/./rust/target/release/build/libR-sys-de9b16e0a549bbcb/out/bindings.rs:1733:5
|
1733 | pub fn Rf_isS4(arg1: SEXP) -> Rboolean;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `Rf_isS4` redefined here
|
::: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/tok.Rcheck/00_pkg_src/tok/src/rust/vendor/libR-sys/src/lib.rs:83:1
|
83 | pub unsafe fn Rf_isS4(arg1: SEXP) -> Rboolean {
| --------------------------------------------- previous definition of the value `Rf_isS4` here
|
= note: `Rf_isS4` must be defined only once in the value namespace of this module
For more information about this error, try `rustc --explain E0428`.
error: could not compile `libR-sys` (lib) due to 2 previous errors
warning: build failed, waiting for other jobs to finish...
make: *** [rust/target/release/libtok.a] Error 101
ERROR: compilation failed for package ‘tok’
* removing ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/tok.Rcheck/tok’