• using R version 4.3.0 RC (2023-04-13 r84266)
• using platform: x86_64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.3 (clang-1403.0.22.14.1)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3
• using session charset: UTF-8
• checking for file ‘spsurv/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘spsurv’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘spsurv’ can be installed ... [133s/122s] OK See the install log for details.
• used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
• used SDK: ‘MacOSX11.3.sdk’
• checking C++ specification ... OK   Not all R platforms support C++17
• checking installed package size ... NOTE   installed size is 50.2Mb   sub-directories of 1Mb or more:     doc 1.5Mb     libs 48.3Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/10s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... NOTE   'LazyData' is specified without a 'data' directory
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] ERROR Running examples in ‘spsurv-Ex.R’ failed The error most likely occurred in: > ### Name: bppo > ### Title: Bernstein Polynomial Based Proportional Odds Model > ### Aliases: bppo > > ### ** Examples > > > library("spsurv") > data("veteran") Warning in data("veteran") : data set ‘veteran’ not found > > fit <- bppo(Surv(time, status) ~ karno + celltype, + data = veteran) Error in optimHess(theta, fn, gr, control = list(fnscale = -1)) :   non-finite value supplied by optim Calls: bppo ... spbp.mle -> <Anonymous> -> <Anonymous> -> .local -> optimHess Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [17s/31s] ERROR   Running ‘testthat.R’ [17s/31s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output:   ── Error ('test.R:33:1'): (code run outside of `test_that()`) ──────────────────   Error in `optimHess(theta, fn, gr, control = list(fnscale = -1))`: non-finite value supplied by optim   Backtrace:       ▆    1. └─spsurv::bppo(Surv(time, status) ~ karno + factor(celltype), data = veteran) at test.R:33:0    2. └─spsurv:::spbp.default(...)    3. └─spsurv:::spbp.mle(standata = standata, ...)    4. ├─rstan::optimizing(...)    5. └─rstan::optimizing(...)    6. └─rstan (local) .local(object, ...)    7. └─stats::optimHess(theta, fn, gr, control = list(fnscale = -1))      [ FAIL 1 | WARN 7 | SKIP 0 | PASS 0 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [0s/0s] NONE   ‘spsurv.Rmd’ using ‘UTF-8’... [0s/0s] OK
• checking re-building of vignette outputs ... [24s/33s] OK
• checking PDF version of manual ... [6s/8s] OK
• DONE Status: 2 ERRORs, 3 NOTEs
• using check arguments '--no-clean-on-error '