* installing *source* package ‘rtmpt’ ...
** package ‘rtmpt’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c Quelle.cpp -o Quelle.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c adaptive_rejection_sampling.cpp -o adaptive_rejection_sampling.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c additions.cpp -o additions.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c derivatives.cpp -o derivatives.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c diagnosis.cpp -o diagnosis.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c diffusion.cpp -o diffusion.o
Quelle.cpp:65:42: warning: unused variable 'igr' [-Wunused-variable]
int r = cat2resp[daten[x].category], igr = t2group[t] * respno + r, itr = t * respno + r;
^
Quelle.cpp:82:10: warning: unused variable 'igr' [-Wunused-variable]
int igr = t2group[t] * respno + r, itr = t * respno + r;
^
Quelle.cpp:217:31: warning: unused variable 'igr' [-Wunused-variable]
int itr = t * respno + r, igr = t2group[t] * respno + r;
^
Quelle.cpp:234:32: warning: unused variable 'igr' [-Wunused-variable]
int itr = t * respno + r, igr = t2group[t] * respno + r;
^
diagnosis.cpp:228:21: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) {
~~~~~~~~~~~^~~~
diagnosis.cpp:228:21: note: remove extraneous parentheses around the comparison to silence this warning
if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) {
~ ^ ~
diagnosis.cpp:228:21: note: use '=' to turn this equality comparison into an assignment
if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) {
^~
=
diagnosis.cpp:1038:24: warning: unused variable 'pd' [-Wunused-variable]
double dbar = 0.0, pd = 0.0, pv = 0.0;
^
diagnosis.cpp:1275:9: warning: variable 'exit_status' set but not used [-Wunused-but-set-variable]
int exit_status = 0;
^
diagnosis.cpp:1291:9: warning: variable 'exit_status' set but not used [-Wunused-but-set-variable]
int exit_status = 1;
^
diagnosis.cpp:1292:9: warning: unused variable 'kein' [-Wunused-variable]
int kein = kerncat * indi, keig = kerncat * igroup;
^
diagnosis.cpp:1507:9: warning: unused variable 'nq' [-Wunused-variable]
int nq = 1;
^
diagnosis.cpp:1564:9: warning: variable 'exit_status' set but not used [-Wunused-but-set-variable]
int exit_status = 0;
^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c gibbs.cpp -o gibbs.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c hamiltonian.cpp -o hamiltonian.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c hcubature.cpp -o hcubature.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c invtri.c -o invtri.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c joint.cpp -o joint.o
4 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c lkj.cpp -o lkj.o
gibbs.cpp:26:11: warning: unused variable 'old_path' [-Wunused-variable]
int old_path = paths[x];
^
hcubature.cpp:282:9: warning: unused variable 'kdiv' [-Wunused-variable]
int kdiv = out.kdivide;
^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c lnnorm.cpp -o lnnorm.o
joint.cpp:116:9: warning: unused variable 'sdt' [-Wunused-variable]
int sdt = indi * respno + t;
^
joint.cpp:301:9: warning: unused variable 'iofft' [-Wunused-variable]
int iofft = iavwoff + t * icompg, itfr = 3 * t * ifreemax;
^
joint.cpp:401:29: warning: unused variable 'ipl' [-Wunused-variable]
int i = root->index, ipl = i + root->level;
^
joint.cpp:444:8: warning: unused variable 'xn' [-Wunused-variable]
int xn = isigoff + indi;
^
lkj.cpp:90:8: warning: variable 'offset2' set but not used [-Wunused-but-set-variable]
int offset2 = nhamil;
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c main.cpp -o main.o
lnnorm.cpp:31:13: warning: variable 'upper' set but not used [-Wunused-but-set-variable]
int upper, lower ;
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c mvtimes.cpp -o mvtimes.o
4 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c onetimes.cpp -o onetimes.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_wrapper.cpp -o r_wrapper.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c rtimes.cpp -o rtimes.o
onetimes.cpp:140:21: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) {
~~~~~~~~~~~^~~~
onetimes.cpp:140:21: note: remove extraneous parentheses around the comparison to silence this warning
if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) {
~ ^ ~
onetimes.cpp:140:21: note: use '=' to turn this equality comparison into an assignment
if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) {
^~
=
mvtimes.cpp:1616:9: warning: variable 'acc' set but not used [-Wunused-but-set-variable]
int acc = 0;
^
onetimes.cpp:423:11: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma optimize("", off)
^
onetimes.cpp:436:11: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma optimize("", on)
^
onetimes.cpp:498:9: warning: unused variable 'n' [-Wunused-variable]
int n = (pars->n), m = (pars->m);
^
onetimes.cpp:578:23: warning: unused variable 'xx' [-Wunused-variable]
gsl_vector* xx = gsl_vector_alloc(icompg + 2);
^
onetimes.cpp:689:19: warning: unused variable 'xx' [-Wunused-variable]
gsl_vector* xx = gsl_vector_alloc(icompg + 2);
^
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c rtmpt_init.c -o rtmpt_init.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c rwiener.cpp -o rwiener.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c specifics.cpp -o specifics.o
7 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c times.cpp -o times.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c tools.cpp -o tools.o
6 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c trait.cpp -o trait.o
times.cpp:122:8: warning: variable 'exit_status' set but not used [-Wunused-but-set-variable]
int exit_status = 0;
^
tools.cpp:60:12: warning: unused variable 'result' [-Wunused-variable]
double result;
^
tools.cpp:290:9: warning: unused variable 'm' [-Wunused-variable]
int m = (irun + 1) * ireps;
^
tools.cpp:805:9: warning: unused variable 'pfadlength' [-Wunused-variable]
int pfadlength = (params->pfadlength);
^
1 warning generated.
1 warning generated.
3 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o rtmpt.so Quelle.o adaptive_rejection_sampling.o additions.o derivatives.o diagnosis.o diffusion.o gibbs.o hamiltonian.o hcubature.o invtri.o joint.o lkj.o lnnorm.o main.o mvtimes.o onetimes.o r_wrapper.o rtimes.o rtmpt_init.o rwiener.o specifics.o times.o tools.o trait.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rtmpt.Rcheck/00LOCK-rtmpt/00new/rtmpt/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rtmpt)