* installing *source* package ‘rsgeo’ ...
** package ‘rsgeo’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
rm -Rf rsgeo.so ./rust/target/release/librsgeo.a entrypoint.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o
if [ "" != "true" ]; then \
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf ./rust/vendor.tar.xz && \
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/.cargo && \
cp ./rust/vendor-config.toml /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/.cargo/config.toml; \
fi; \
export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/.cargo; \
export PATH="/opt/gfortran/bin:/opt/R/x86_64/bin:/Library/TeX/texbin:/usr/texbin:/opt/R/x86_64/gfortran/bin:/usr/local/bin:/usr/local/gfortran/bin:/usr/local/teTeX/bin/x86_64-apple-darwin-current:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/vendor ./rust/target/release/build; \
else \
export PATH="/opt/gfortran/bin:/opt/R/x86_64/bin:/Library/TeX/texbin:/usr/texbin:/opt/R/x86_64/gfortran/bin:/usr/local/bin:/usr/local/gfortran/bin:/usr/local/teTeX/bin/x86_64-apple-darwin-current:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
cargo build --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
fi
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.86
Compiling unicode-ident v1.0.12
Compiling autocfg v1.3.0
Compiling libm v0.2.8
Compiling ident_case v1.0.1
Compiling semver v1.0.23
Compiling strsim v0.11.1
Compiling fnv v1.0.7
Compiling byteorder v1.5.0
Compiling stable_deref_trait v1.2.0
Compiling num-traits v0.2.19
Compiling lock_api v0.4.12
Compiling scopeguard v1.2.0
Compiling version_check v0.9.4
Compiling ahash v0.8.11
Compiling smallvec v1.13.2
Compiling heapless v0.8.0
Compiling once_cell v1.19.0
Compiling rustc_version v0.4.0
Compiling serde v1.0.204
Compiling crossbeam-utils v0.8.20
Compiling heapless v0.7.17
Compiling quote v1.0.36
Compiling syn v2.0.70
Compiling spin v0.9.8
Compiling hash32 v0.2.1
Compiling hash32 v0.3.1
Compiling zerocopy v0.7.35
Compiling cfg-if v1.0.0
Compiling either v1.13.0
Compiling libR-sys v0.7.0
Compiling serde_json v1.0.120
Compiling allocator-api2 v0.2.18
Compiling paste v1.0.15
Compiling rstar v0.12.0
Compiling rstar v0.11.0
Compiling crossbeam-epoch v0.9.18
Compiling hashbrown v0.14.5
Compiling itertools v0.11.0
Compiling approx v0.5.1
Compiling extendr-api v0.7.0
Compiling ryu v1.0.18
Compiling rayon-core v1.12.1
Compiling itoa v1.0.11
Compiling robust v1.1.0
Compiling geo-types v0.7.13 (https://github.com/georust/geo#ff0eccbc)
Compiling spade v2.9.0
Compiling crossbeam-deque v0.8.5
error[E0428]: the name `R_altrep_Coerce_method_t` is defined multiple times
--> /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/./rust/target/release/build/libR-sys-de9b16e0a549bbcb/out/bindings.rs:594:1
|
594 | / pub type R_altrep_Coerce_method_t =
595 | | ::std::option::Option<unsafe extern "C" fn(arg1: SEXP, arg2: ::std::os::raw::c_int) -> SEXP>;
| |_________________________________________________________________________________________________^ `R_altrep_Coerce_method_t` redefined here
|
::: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/vendor/libR-sys/src/lib.rs:80:1
|
80 | / pub type R_altrep_Coerce_method_t =
81 | | ::std::option::Option<unsafe extern "C" fn(arg1: SEXP, arg2: SEXPTYPE) -> SEXP>;
| |____________________________________________________________________________________- previous definition of the type `R_altrep_Coerce_method_t` here
|
= note: `R_altrep_Coerce_method_t` must be defined only once in the type namespace of this module
error[E0428]: the name `Rf_isS4` is defined multiple times
--> /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/./rust/target/release/build/libR-sys-de9b16e0a549bbcb/out/bindings.rs:1733:5
|
1733 | pub fn Rf_isS4(arg1: SEXP) -> Rboolean;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `Rf_isS4` redefined here
|
::: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/00_pkg_src/rsgeo/src/vendor/libR-sys/src/lib.rs:83:1
|
83 | pub unsafe fn Rf_isS4(arg1: SEXP) -> Rboolean {
| --------------------------------------------- previous definition of the value `Rf_isS4` here
|
= note: `Rf_isS4` must be defined only once in the value namespace of this module
Compiling geographiclib-rs v0.2.4
Compiling float_next_after v1.0.0
For more information about this error, try `rustc --explain E0428`.
error: could not compile `libR-sys` (lib) due to 2 previous errors
warning: build failed, waiting for other jobs to finish...
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o rsgeo.so entrypoint.o -L./rust/target/release -lrsgeo -lssl -lcrypto -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: library not found for -lrsgeo
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [rsgeo.so] Error 1
ERROR: compilation failed for package ‘rsgeo’
* removing ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/rsgeo.Rcheck/rsgeo’