Check results for 'popReconstruct'

using R version 4.3.0 beta (2023-04-08 r84203)
using platform: x86_64-apple-darwin20 (64-bit)
R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3
using session charset: UTF-8
checking for file ‘popReconstruct/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘popReconstruct’ version ‘1.0-6’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘popReconstruct’ can be installed ... [2s/3s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [2s/3s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking data for ASCII and uncompressed saves ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [0s/0s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [2s/3s] OK Running ‘run_tests.R’ [2s/3s] Running ‘test_functions.R’ [0s/0s]
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [6s/8s] OK ‘burkina-faso-females.Rnw’ using ‘UTF-8’... [6s/8s] OK
checking re-building of vignette outputs ... [13s/18s] NOTE Error(s) in re-building vignettes: --- re-building ‘burkina-faso-females.Rnw’ using Sweave Loading required package: coda Loading required package: gdata gdata: read.xls support for 'XLS' (Excel 97-2004) files gdata: ENABLED. gdata: read.xls support for 'XLSX' (Excel 2007+) files gdata: ENABLED. Attaching package: ‘gdata’ The following object is masked from ‘package:stats’: nobs The following object is masked from ‘package:utils’: object.size The following object is masked from ‘package:base’: startsWith Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in type.convert.default(X[[i]], ...) : 'as.is' should be specified by the caller; using TRUE Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Calculating life expectancy at birth ... ... done Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Calculating net number of migrants ... ... done Warning in max(ids, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Error: processing vignette 'burkina-faso-females.Rnw' failed with diagnostics: Running 'texi2dvi' on 'burkina-faso-females.tex' failed. LaTeX errors: ! LaTeX Error: File `pdfcolmk.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.270 \long \def\@secondoffive#1#2#3#4#5{#2}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘burkina-faso-females.Rnw’ SUMMARY: processing the following file failed: ‘burkina-faso-females.Rnw’ Error: Vignette re-building failed. Execution halted
checking PDF version of manual ... [4s/5s] OK
DONE Status: 1 NOTE
using check arguments '--no-clean-on-error '