* installing *source* package ‘orbweaver’ ...
** package ‘orbweaver’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
rm -Rf orbweaver.so ./rust/target/release/liborbweaver.a entrypoint.o /Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/vendor
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/.cargo && \
cp rust/vendor-config.toml /Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/.cargo/config.toml; \
fi
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/.cargo; \
fi && \
export PATH="/opt/gfortran/bin:/opt/R/x86_64/bin:/Library/TeX/texbin:/usr/texbin:/opt/R/x86_64/gfortran/bin:/usr/local/bin:/usr/local/gfortran/bin:/usr/local/teTeX/bin/x86_64-apple-darwin-current:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target && \
echo `cargo --version` && echo `rustc --version`;
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.85
Compiling unicode-ident v1.0.12
Compiling libc v0.2.155
Compiling glob v0.3.1
Compiling rustix v0.38.34
Compiling prettyplease v0.2.20
Compiling either v1.12.0
Compiling minimal-lexical v0.2.1
Compiling bitflags v2.5.0
Compiling memchr v2.7.2
Compiling clang-sys v1.8.1
Compiling cfg-if v1.0.0
Compiling regex-syntax v0.8.4
Compiling libloading v0.8.3
Compiling home v0.5.9
Compiling quote v1.0.36
Compiling bindgen v0.69.4
Compiling syn v2.0.66
Compiling nom v7.1.3
Compiling crossbeam-utils v0.8.20
Compiling unicode-width v0.1.13
Compiling yansi-term v0.1.2
Compiling annotate-snippets v0.9.2
Compiling itertools v0.12.1
Compiling errno v0.3.9
Compiling regex-automata v0.4.7
Compiling log v0.4.21
Compiling which v4.4.2
Compiling cexpr v0.6.0
Compiling lazy_static v1.4.0
Compiling shlex v1.3.0
Compiling rustc-hash v1.1.0
Compiling lazycell v1.3.0
Compiling version_check v0.9.4
Compiling ahash v0.8.11
Compiling once_cell v1.19.0
Compiling serde v1.0.203
Compiling crossbeam-epoch v0.9.18
Compiling rayon-core v1.12.1
Compiling zerocopy v0.7.34
Compiling crossbeam-deque v0.8.5
Compiling regex v1.10.5
Compiling adler v1.0.2
Compiling paste v1.0.15
Compiling hashbrown v0.14.5
Compiling miniz_oxide v0.7.3
Compiling crc32fast v1.4.2
Compiling extendr-api v0.6.0 (https://github.com/extendr/extendr.git?rev=cb85a21a90c3fcb538a40fcea03058454edb3dac#cb85a21a)
Compiling half v1.8.3
Compiling byteorder v1.5.0
Compiling rayon v1.10.0
Compiling fxhash v0.2.1
Compiling serde_derive v1.0.203
Compiling extendr-macros v0.6.0 (https://github.com/extendr/extendr.git?rev=cb85a21a90c3fcb538a40fcea03058454edb3dac#cb85a21a)
Compiling flate2 v1.0.30
Compiling libR-sys v0.7.0 (https://github.com/extendr/libR-sys?rev=b26b858230a5ab9675b2b69eea74ababc9a895c9#b26b8582)
error[E0428]: the name `R_altrep_Coerce_method_t` is defined multiple times
--> /Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/./rust/target/release/build/libR-sys-47e604b62ecd7980/out/bindings.rs:594:1
|
594 | / pub type R_altrep_Coerce_method_t =
595 | | ::std::option::Option<unsafe extern "C" fn(arg1: SEXP, arg2: ::std::os::raw::c_int) -> SEXP>;
| |_________________________________________________________________________________________________^ `R_altrep_Coerce_method_t` redefined here
|
::: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/vendor/libR-sys/src/lib.rs:80:1
|
80 | / pub type R_altrep_Coerce_method_t =
81 | | ::std::option::Option<unsafe extern "C" fn(arg1: SEXP, arg2: SEXPTYPE) -> SEXP>;
| |____________________________________________________________________________________- previous definition of the type `R_altrep_Coerce_method_t` here
|
= note: `R_altrep_Coerce_method_t` must be defined only once in the type namespace of this module
error[E0428]: the name `Rf_isS4` is defined multiple times
--> /Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/./rust/target/release/build/libR-sys-47e604b62ecd7980/out/bindings.rs:1733:5
|
1733 | pub fn Rf_isS4(arg1: SEXP) -> Rboolean;
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `Rf_isS4` redefined here
|
::: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/00_pkg_src/orbweaver/src/vendor/libR-sys/src/lib.rs:83:1
|
83 | pub unsafe fn Rf_isS4(arg1: SEXP) -> Rboolean {
| --------------------------------------------- previous definition of the value `Rf_isS4` here
|
= note: `Rf_isS4` must be defined only once in the value namespace of this module
For more information about this error, try `rustc --explain E0428`.
error: could not compile `libR-sys` (lib) due to 2 previous errors
warning: build failed, waiting for other jobs to finish...
make: *** [rust/target/release/liborbweaver.a] Error 101
ERROR: compilation failed for package ‘orbweaver’
* removing ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/orbweaver.Rcheck/orbweaver’