• using R version 4.3.3 (2024-02-29)
• using platform: x86_64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘intSDM/DESCRIPTION’ ... OK
• this is package ‘intSDM’ version ‘2.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘INLA’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘intSDM’ can be installed ... [24s/37s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [7s/11s] OK
• checking whether the package can be loaded with stated dependencies ... [7s/10s] OK
• checking whether the package can be unloaded cleanly ... [7s/10s] OK
• checking whether the namespace can be loaded with stated dependencies ... [7s/12s] OK
• checking whether the namespace can be unloaded cleanly ... [7s/12s] OK
• checking loading without being on the library search path ... [7s/10s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/33s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘INLA’
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/17s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/16s] OK   Running ‘testthat.R’ [8s/15s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [22s/30s] WARNING Errors in running code in vignettes: when running code in ‘PennsylvaniaWarbler.Rmd’   ... Loading required package: PointedSDMs Loading required package: inlabru Loading required package: fmesher Loading required package: R6 > library(USAboundaries)   When sourcing ‘PennsylvaniaWarbler.R’: Error: there is no package called ‘USAboundaries’ Execution halted when running code in ‘RedList.Rmd’   ... Loading required package: PointedSDMs Loading required package: inlabru Loading required package: fmesher Loading required package: R6 > library(INLA)   When sourcing ‘RedList.R’: Error: there is no package called ‘INLA’ Execution halted when running code in ‘Richness.Rmd’   ... Loading required package: PointedSDMs Loading required package: inlabru Loading required package: fmesher Loading required package: R6 > library(INLA)   When sourcing ‘Richness.R’: Error: there is no package called ‘INLA’ Execution halted   ‘PennsylvaniaWarbler.Rmd’ using ‘UTF-8’... failed   ‘RedList.Rmd’ using ‘UTF-8’... failed   ‘Richness.Rmd’ using ‘UTF-8’... failed
• checking re-building of vignette outputs ... [15s/20s] OK
• checking PDF version of manual ... [6s/8s] OK
• DONE Status: 1 WARNING, 2 NOTEs
• using check arguments '--no-clean-on-error '