- using R version 4.3.3 (2024-02-29)
- using platform: x86_64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘httk/DESCRIPTION’ ... OK
- this is package ‘httk’ version ‘2.4.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘httk’ can be installed ... [20s/24s] OK
See the install log for details.
- used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
data 2.3Mb
doc 2.3Mb
help 1.1Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking startup messages can be suppressed ... [2s/2s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [17s/22s] OK
- checking Rd files ... [5s/8s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [37s/46s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [142s/197s] OK
Running ‘1comp_test.R’ [14s/17s]
Comparing ‘1comp_test.Rout’ to ‘1comp_test.Rout.save’ ... OK
Running ‘3comp_test.R’ [14s/19s]
Comparing ‘3comp_test.Rout’ to ‘3comp_test.Rout.save’ ... OK
Running ‘3compss_test.R’ [6s/9s]
Comparing ‘3compss_test.Rout’ to ‘3compss_test.Rout.save’ ... OK
Running ‘adddata_test.R’ [4s/7s]
Comparing ‘adddata_test.Rout’ to ‘adddata_test.Rout.save’ ... OK
Running ‘caco2_test.R’ [12s/16s]
Comparing ‘caco2_test.Rout’ to ‘caco2_test.Rout.save’ ... OK
Running ‘cheminfo_test.R’ [4s/6s]
Comparing ‘cheminfo_test.Rout’ to ‘cheminfo_test.Rout.save’ ... OK
Running ‘fetal_pbtk_testing.R’ [8s/13s]
Comparing ‘fetal_pbtk_testing.Rout’ to ‘fetal_pbtk_testing.Rout.save’ ... OK
Running ‘ivive_test.R’ [16s/19s]
Comparing ‘ivive_test.Rout’ to ‘ivive_test.Rout.save’ ... OK
Running ‘montecarlo_tests.R’ [28s/40s]
Comparing ‘montecarlo_tests.Rout’ to ‘montecarlo_tests.Rout.save’ ... OK
Running ‘other_tests.R’ [14s/20s]
Comparing ‘other_tests.Rout’ to ‘other_tests.Rout.save’ ... OK
Running ‘pbtk_test.R’ [11s/16s]
Comparing ‘pbtk_test.Rout’ to ‘pbtk_test.Rout.save’ ... OK
Running ‘solve_gas_test.R’ [7s/10s]
Comparing ‘solve_gas_test.Rout’ to ‘solve_gas_test.Rout.save’ ... OK
Running ‘unit_test.R’ [4s/5s]
Comparing ‘unit_test.Rout’ to ‘unit_test.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [18s/21s] OK
‘V1_IntroToHTTK.Rmd’ using ‘UTF-8’... [10s/12s] OK
‘V2_IntrotoIVIVE.Rmd’ using ‘UTF-8’... [2s/3s] OK
‘Va_Pearce2017.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘Vb_Ring2017.Rmd’ using ‘UTF-8’... [0s/1s] OK
‘Vc_Pearce2017.Rmd’ using ‘UTF-8’... [0s/1s] OK
‘Vd_Frank2019.Rmd’ using ‘UTF-8’... [0s/1s] OK
‘Ve_Wambaugh2018.Rmd’ using ‘UTF-8’... [0s/1s] OK
‘Vf_Honda2019.Rmd’ using ‘UTF-8’... [0s/1s] OK
‘Vg_Wambaugh2019.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘Vh_Linakis2020.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘Vi_Kapraun2022.Rmd’ using ‘UTF-8’... [1s/1s] OK
- checking re-building of vignette outputs ... [112s/151s] OK
- checking PDF version of manual ... [17s/24s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '