Check results for 'hsdar'

using R version 4.3.0 beta (2023-04-08 r84203)
using platform: x86_64-apple-darwin20 (64-bit)
R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3
using session charset: UTF-8
checking for file ‘hsdar/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘hsdar’ version ‘1.0.4’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘hsdar’ can be installed ... [57s/76s] OK See the install log for details.
used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
used Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
used SDK: ‘MacOSX11.3.sdk’
checking installed package size ... NOTE installed size is 7.2Mb sub-directories of 1Mb or more: R 3.0Mb doc 2.5Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [8s/10s] OK
checking whether the package can be loaded with stated dependencies ... [7s/10s] OK
checking whether the package can be unloaded cleanly ... [7s/10s] OK
checking whether the namespace can be loaded with stated dependencies ... [7s/10s] OK
checking whether the namespace can be unloaded cleanly ... [7s/10s] OK
checking loading without being on the library search path ... [7s/9s] OK
checking startup messages can be suppressed ... [8s/10s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [27s/37s] OK
checking Rd files ... [9s/12s] NOTE checkRd: (-1) attributes_speclib.Rd:73: Escaped LaTeX specials: \$ checkRd: (-1) get_reflectance.Rd:34: Escaped LaTeX specials: \&
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [8s/11s] OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking compiled code ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [21s/29s] OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [23s/31s] OK ‘Hsdar-intro.Rnw’ using ‘CP1252’... [22s/31s] OK ‘References.Rnw’ using ‘CP1252’... [0s/0s] OK
checking re-building of vignette outputs ... [36s/48s] NOTE Error(s) in re-building vignettes: --- re-building ‘Hsdar-intro.Rnw’ using Sweave Loading required package: raster Loading required package: sp Loading required package: rgdal Please note that rgdal will be retired during 2023, plan transition to sf/stars/terra functions using GDAL and PROJ at your earliest convenience. See https://r-spatial.org/r/2022/04/12/evolution.html and https://github.com/r-spatial/evolution rgdal: version: 1.6-5, (SVN revision 1199) Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 3.5.3, released 2022/10/21 Path to GDAL shared files: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rgdal/gdal GDAL does not use iconv for recoding strings. GDAL binary built with GEOS: TRUE Loaded PROJ runtime: Rel. 9.1.0, September 1st, 2022, [PJ_VERSION: 910] Path to PROJ shared files: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rgdal/proj PROJ CDN enabled: FALSE Linking to sp version:1.6-0 To mute warnings of possible GDAL/OSR exportToProj4() degradation, use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal. Loading required package: signal Attaching package: ‘signal’ The following object is masked from ‘package:raster’: resample The following objects are masked from ‘package:stats’: filter, poly Loading required package: caret Loading required package: ggplot2 Loading required package: lattice Loading required package: Boruta ################################### This is hsdar 1.0.4 To get citation entry type 'citation("hsdar")' ################################### Attaching package: ‘hsdar’ The following object is masked from ‘package:raster’: nbands Warning: Not a validObject(): no slot of name "srs" for this object of class "RasterBrick" Warning in points2grid(points, tolerance, round) : cell size from constant coordinate 3 possibly taken from other coordinate Warning: GDAL support is provided by the sf and terra packages among others Warning in checkhull(sh_cline, 1) : Mismatch of continuum line at wavelength = 2487 Maximum distance between continuum line & spectrum at Wavelength = 2495 --- finished re-building ‘Hsdar-intro.Rnw’ --- re-building ‘References.Rnw’ using Sweave Error: processing vignette 'References.Rnw' failed with diagnostics: Running 'texi2dvi' on 'References.tex' failed. BibTeX errors: The top-level auxiliary file: References.aux I couldn't open style file elsarticle-harv.bst ---line 86 of file References.aux : \bibstyle{elsarticle-harv : } I'm skipping whatever remains of this command I found no style file---while reading file References.aux --- failed re-building ‘References.Rnw’ SUMMARY: processing the following file failed: ‘References.Rnw’ Error: Vignette re-building failed. Execution halted
checking PDF version of manual ... [9s/12s] OK
DONE Status: 3 NOTEs
using check arguments '--no-clean-on-error '