* installing *source* package ‘hdf5r’ ...
** package ‘hdf5r’ successfully unpacked and MD5 sums checked
** using staged installation
checking for a sed that does not truncate output... /usr/bin/sed
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking for grep that handles long lines and -e... /usr/bin/grep
checking for gcc... clang -arch x86_64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for h5cc... /opt/R/x86_64/bin/h5cc
checking for HDF5 libraries... yes (version 1.12.2)
checking for hdf5.h... yes
checking for H5Fcreate in -lhdf5... yes
checking for hdf5_hl.h... yes
checking for H5LTpath_valid in -lhdf5_hl... yes
checking for main in -lhdf5_hl... yes
checking for matching HDF5 Fortran wrapper... no
Found hdf5 with version: 1.12.2
checking for ggrep... /usr/bin/grep
checking whether /usr/bin/grep accepts -o... yes
checking for ggrep... (cached) /usr/bin/grep
checking whether /usr/bin/grep accepts -o... yes
Using variables:
HDF5_LIBS= -L/opt/R/x86_64/lib  -L/opt/R/x86_64/lib  -lsz  -lz  -ldl  -lm  -L. -lhdf5_hl -lhdf5 -lz -lm
HDF5_CFLAGS=
HDF5_CPPFLAGS=-I/opt/R/x86_64/include -I/opt/R/x86_64/include 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
cp 1_12_0/*.c 1_12_0/*.h .
if [ "" != "" ]; then patch -p2 < patch_; fi
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c const_export.c -o const_export.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c datatype_export.c -o datatype_export.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5A.c -o Wrapper_auto_H5A.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5.c -o Wrapper_auto_H5.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5D.c -o Wrapper_auto_H5D.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5DS.c -o Wrapper_auto_H5DS.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5E.c -o Wrapper_auto_H5E.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5F.c -o Wrapper_auto_H5F.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5G.c -o Wrapper_auto_H5G.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5I.c -o Wrapper_auto_H5I.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5IM.c -o Wrapper_auto_H5IM.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5L.c -o Wrapper_auto_H5L.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5LT.c -o Wrapper_auto_H5LT.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5O.c -o Wrapper_auto_H5O.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5P.c -o Wrapper_auto_H5P.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5R.c -o Wrapper_auto_H5R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5S.c -o Wrapper_auto_H5S.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5TB.c -o Wrapper_auto_H5TB.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5T.c -o Wrapper_auto_H5T.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5Z.c -o Wrapper_auto_H5Z.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDcore.c -o Wrapper_auto_H5FDcore.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDfamily.c -o Wrapper_auto_H5FDfamily.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDlog.c -o Wrapper_auto_H5FDlog.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDsec2.c -o Wrapper_auto_H5FDsec2.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDstdio.c -o Wrapper_auto_H5FDstdio.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c convert.c -o convert.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c hdf5r_init.c -o hdf5r_init.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c H5Error.c -o H5Error.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c H5ls.c -o H5ls.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o hdf5r.so const_export.o datatype_export.o Wrapper_auto_H5A.o Wrapper_auto_H5.o Wrapper_auto_H5D.o Wrapper_auto_H5DS.o Wrapper_auto_H5E.o Wrapper_auto_H5F.o Wrapper_auto_H5G.o Wrapper_auto_H5I.o Wrapper_auto_H5IM.o Wrapper_auto_H5L.o Wrapper_auto_H5LT.o Wrapper_auto_H5O.o Wrapper_auto_H5P.o Wrapper_auto_H5R.o Wrapper_auto_H5S.o Wrapper_auto_H5TB.o Wrapper_auto_H5T.o Wrapper_auto_H5Z.o Wrapper_auto_H5FDcore.o Wrapper_auto_H5FDfamily.o Wrapper_auto_H5FDlog.o Wrapper_auto_H5FDsec2.o Wrapper_auto_H5FDstdio.o convert.o hdf5r_init.o H5Error.o H5ls.o Wrapper_manual_H5T.o -L/opt/R/x86_64/lib -L/opt/R/x86_64/lib -lsz -lz -ldl -lm -L. -lhdf5_hl -lhdf5 -lz -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
cp 1_12_0/*.c 1_12_0/*.h .
if [ "" != "" ]; then patch -p2 < patch_; fi
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c const_export.c -o const_export.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c datatype_export.c -o datatype_export.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5A.c -o Wrapper_auto_H5A.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5.c -o Wrapper_auto_H5.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5D.c -o Wrapper_auto_H5D.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5DS.c -o Wrapper_auto_H5DS.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5E.c -o Wrapper_auto_H5E.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5F.c -o Wrapper_auto_H5F.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5G.c -o Wrapper_auto_H5G.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5I.c -o Wrapper_auto_H5I.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5IM.c -o Wrapper_auto_H5IM.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5L.c -o Wrapper_auto_H5L.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5LT.c -o Wrapper_auto_H5LT.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5O.c -o Wrapper_auto_H5O.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5P.c -o Wrapper_auto_H5P.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5R.c -o Wrapper_auto_H5R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5S.c -o Wrapper_auto_H5S.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5TB.c -o Wrapper_auto_H5TB.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5T.c -o Wrapper_auto_H5T.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5Z.c -o Wrapper_auto_H5Z.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDcore.c -o Wrapper_auto_H5FDcore.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDfamily.c -o Wrapper_auto_H5FDfamily.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDlog.c -o Wrapper_auto_H5FDlog.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDsec2.c -o Wrapper_auto_H5FDsec2.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_auto_H5FDstdio.c -o Wrapper_auto_H5FDstdio.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c convert.c -o convert.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c hdf5r_init.c -o hdf5r_init.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c H5Error.c -o H5Error.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c H5ls.c -o H5ls.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include   -I/opt/R/x86_64/include   -D__USE_MINGW_ANSI_STDIO -DH5_USE_110_API -fPIC  -falign-functions=64 -Wall -g -O2  -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/hdf5r.Rcheck/00LOCK-hdf5r/00new/hdf5r/libs
** generating debug symbols (dSYM)
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** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hdf5r)