• using R version 4.3.3 (2024-02-29)
• using platform: x86_64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘geostan/DESCRIPTION’ ... OK
• this is package ‘geostan’ version ‘0.8.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘geostan’ can be installed ... [159s/169s] OK See the install log for details.
• used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
• used SDK: ‘MacOSX11.3.sdk’
• checking C++ specification ... OK   Not all R platforms support C++17
• checking installed package size ... NOTE   installed size is 113.8Mb   sub-directories of 1Mb or more:     doc 1.2Mb     libs 111.3Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [6s/6s] OK
• checking startup messages can be suppressed ... [3s/3s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/10s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [27s/27s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [226s/225s] OK   Running ‘check-ME-estimates-monte-carlo.R’ [64s/63s]   Running ‘check-SEM-CAR-GLM-estimates-monte-carlo.R’ [26s/26s]   Running ‘check-SLM-estimates-monte-carlo.R’ [107s/107s]   Running ‘missing-y.R’ [6s/6s]   Running ‘model-comparison.R’ [5s/5s]   Running ‘testthat.R’ [19s/18s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [81s/81s] ERROR Error(s) in re-building vignettes: --- re-building ‘custom-spatial-models.Rmd’ using rmarkdown --- finished re-building ‘custom-spatial-models.Rmd’ --- re-building ‘measuring-sa.Rmd’ using rmarkdown --- finished re-building ‘measuring-sa.Rmd’ --- re-building ‘raster-regression.Rmd’ using rmarkdown --- finished re-building ‘raster-regression.Rmd’ --- re-building ‘spatial-analysis.Rmd’ using rmarkdown Quitting from lines 462-478 [unnamed-chunk-37] (spatial-analysis.Rmd) Error: processing vignette 'spatial-analysis.Rmd' failed with diagnostics: need finite 'ylim' values --- failed re-building ‘spatial-analysis.Rmd’ --- re-building ‘spatial-me-models.Rmd’ using rmarkdown --- finished re-building ‘spatial-me-models.Rmd’ --- re-building ‘spatial-weights-matrix.Rmd’ using rmarkdown --- finished re-building ‘spatial-weights-matrix.Rmd’ SUMMARY: processing the following file failed:   ‘spatial-analysis.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [6s/6s] OK
• DONE Status: 1 ERROR, 2 NOTEs
• using check arguments '--no-clean-on-error '