* installing *source* package ‘dodgr’ ...
** package ‘dodgr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c heaps/bheap.cpp -o heaps/bheap.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c heaps/fheap.cpp -o heaps/fheap.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c heaps/heap23.cpp -o heaps/heap23.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c heaps/triheap.cpp -o heaps/triheap.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c centrality.cpp -o centrality.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c concaveman.cpp -o concaveman.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c deduplicate.cpp -o deduplicate.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dgraph.cpp -o dgraph.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pathfinders.cpp -o pathfinders.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dodgr-to-sf.cpp -o dodgr-to-sf.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c flows.cpp -o flows.o
In file included from concaveman.cpp:1:
./concaveman.h:694:38: warning: unused typedef 'circ_elem_type' [-Wunused-local-typedef]
typedef CircularElement<Node<T>> circ_elem_type;
^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fund-cycles.cpp -o fund-cycles.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph-contract.cpp -o graph-contract.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph.cpp -o graph.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph-sample.cpp -o graph-sample.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c match-points.cpp -o match-points.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
graph.cpp:198:10: warning: variable 'has_times' set but not used [-Wunused-but-set-variable]
bool has_times = graph::graph_from_df (graph, vertices, edge_map, vert2edge_map);
^
graph.cpp:202:12: warning: variable 'largest_component' set but not used [-Wunused-but-set-variable]
size_t largest_component =
^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c run_sp.cpp -o run_sp.o
graph-sample.cpp:109:10: warning: variable 'has_times' set but not used [-Wunused-but-set-variable]
bool has_times = graph::graph_from_df (graph, vertices, edge_map, vert2edge_map);
^
match-points.cpp:99:17: warning: variable 'which_side' set but not used [-Wunused-but-set-variable]
int which_side = INFINITE_INT;
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c run_sp_categorical.cpp -o run_sp_categorical.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sc-as-network.cpp -o sc-as-network.o
run_sp.cpp:350:28: warning: unused variable 'st_prev' [-Wunused-variable]
size_t st_prev = static_cast <size_t> (prev [j]);
^
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sf-as-network.cpp -o sf-as-network.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppThread/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c turn_penalty.cpp -o turn_penalty.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o dodgr.so heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/triheap_ext.o heaps/triheap.o centrality.o concaveman.o deduplicate.o dgraph.o pathfinders.o dodgr-to-sf.o flows.o fund-cycles.o graph-contract.o graph.o graph-sample.o match-points.o RcppExports.o run_sp.o run_sp_categorical.o sc-as-network.o sf-as-network.o turn_penalty.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/dodgr.Rcheck/00LOCK-dodgr/00new/dodgr/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dodgr)