- using R version 4.3.0 (2023-04-21)
- using platform: x86_64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘ctsem/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ctsem’ version ‘3.9.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘ctsem’ can be installed ... [16m/23m] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘MacOSX11.3.sdk’
- checking C++ specification ... OK
Not all R platforms support C++17
- checking installed package size ... NOTE
installed size is 180.8Mb
sub-directories of 1Mb or more:
R 2.1Mb
data 2.0Mb
libs 175.5Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [6s/8s] OK
- checking whether the package can be loaded with stated dependencies ... [5s/9s] OK
- checking whether the package can be unloaded cleanly ... [6s/9s] OK
- checking whether the namespace can be loaded with stated dependencies ... [5s/9s] OK
- checking whether the namespace can be unloaded cleanly ... [5s/10s] OK
- checking loading without being on the library search path ... [6s/11s] OK
- checking startup messages can be suppressed ... [6s/12s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [26s/49s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [5s/9s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [17s/29s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [74s/114s] ERROR
Running ‘testthat.R’ [73s/114s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Chain 1: Iteration: 290 / 300 [ 96%] (Sampling)
Chain 2: Iteration: 190 / 300 [ 63%] (Sampling)
Chain 1: Iteration: 300 / 300 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 22.012 seconds (Warm-up)
Chain 1: 17.161 seconds (Sampling)
Chain 1: 39.173 seconds (Total)
Chain 1:
Chain 2: Iteration: 210 / 300 [ 70%] (Sampling)
Chain 2: Iteration: 230 / 300 [ 76%] (Sampling)
Chain 2: Iteration: 250 / 300 [ 83%] (Sampling)
Chain 2: Iteration: 270 / 300 [ 90%] (Sampling)
Chain 2: Iteration: 290 / 300 [ 96%] (Sampling)
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [0s/0s] NONE
‘hierarchicalmanual.rnw’ using ‘UTF-8’... [0s/0s] OK
- checking re-building of vignette outputs ...* using check arguments '--no-clean-on-error '