- using R version 4.3.3 (2024-02-29)
- using platform: x86_64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘coxme/DESCRIPTION’ ... OK
- this is package ‘coxme’ version ‘2.2-22’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘coxme’ can be installed ... [11s/14s] OK
See the install log for details.
- used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [8s/13s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for GNU extensions in Makefiles ... OK
- checking include directives in Makefiles ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/4s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [50s/79s] OK
Running ‘brfit.R’ [3s/4s]
Running ‘lmekin1.R’ [3s/4s]
Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK
Running ‘lmekin2.R’ [2s/3s]
Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK
Running ‘nest1.R’ [2s/2s]
Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK
Running ‘nest2.R’ [2s/2s]
Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK
Running ‘refine.R’ [2s/3s]
Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK
Running ‘refine1.R’ [2s/3s]
Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK
Running ‘refine2.R’ [2s/3s]
Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK
Running ‘refine3.R’ [2s/3s]
Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK
Running ‘shrink.R’ [2s/2s]
Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK
Running ‘slope1.R’ [7s/12s]
Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK
Running ‘slope2.R’ [3s/5s]
Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK
Running ‘slope3.R’ [3s/4s]
Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK
Running ‘slope4.R’ [6s/9s]
Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK
Running ‘strata1.R’ [2s/2s]
Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK
Running ‘test0.R’ [2s/3s]
Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK
Running ‘test1.R’ [2s/2s]
Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK
Running ‘test2.R’ [2s/2s]
Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK
Running ‘test3.R’ [2s/2s]
Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK
Running ‘test4.R’ [2s/2s]
Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK
Running ‘twoterm.R’ [2s/3s]
Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [23s/31s] OK
‘coxme.Rnw’... [8s/13s] OK
‘laplace.Rnw’... [8s/10s] OK
‘lmekin.Rnw’... [5s/6s] OK
‘variance.Rnw’... [2s/2s] OK
- checking re-building of vignette outputs ... [43s/52s] OK
- checking PDF version of manual ... [8s/10s] OK
- DONE
Status: OK
- using check arguments '--no-clean-on-error '