* installing *source* package ‘clrng’ ...
** package ‘clrng’ successfully unpacked and MD5 sums checked
** using staged installation
OPENCL_FLAGS not set, using default -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120
Darwin OS
OPENCL_LIB not set, trying default lib location
Checking OpenCL C++ API
OPENCL_INC not set, using default include directory
*********** Generated Makevars file ***********
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***********************************************
** libs
Makevars:20: warning: overriding commands for target `../inst/include/loader/libOpenCL.a'
Makevars:9: warning: ignoring old commands for target `../inst/include/loader/libOpenCL.a'
Makevars:31: warning: overriding commands for target `../inst/include/loader/libOpenCL.a'
Makevars:20: warning: ignoring old commands for target `../inst/include/loader/libOpenCL.a'
Makevars:42: warning: overriding commands for target `../inst/include/loader/libOpenCL.a'
Makevars:31: warning: ignoring old commands for target `../inst/include/loader/libOpenCL.a'
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
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Makevars:31: warning: overriding commands for target `../inst/include/loader/libOpenCL.a'
Makevars:20: warning: ignoring old commands for target `../inst/include/loader/libOpenCL.a'
Makevars:42: warning: overriding commands for target `../inst/include/loader/libOpenCL.a'
Makevars:31: warning: ignoring old commands for target `../inst/include/loader/libOpenCL.a'
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fisher_test_sim.cpp -o fisher_test_sim.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gpuRnMatrix.cpp -o gpuRnMatrix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lfactSum.cpp -o lfactSum.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mrg31k3pkernelString.cpp -o mrg31k3pkernelString.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c qqnorm.cpp -o qqnorm.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c streams.cpp -o streams.o
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from lfactSum.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/matrix.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/detail/matrix_def.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/scalar.hpp:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/meta/result_of.hpp:42:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from gpuRnMatrix.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/matrix.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/detail/matrix_def.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/scalar.hpp:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/meta/result_of.hpp:42:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from fisher_test_sim.cpp:15:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/matrix.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/detail/matrix_def.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/scalar.hpp:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/meta/result_of.hpp:42:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from qqnorm.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/matrix.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/detail/matrix_def.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/scalar.hpp:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/meta/result_of.hpp:42:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from streams.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/matrix.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/detail/matrix_def.hpp:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/tools/entry_proxy.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/scalar.hpp:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include/viennacl/meta/result_of.hpp:42:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from lfactSum.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from gpuRnMatrix.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from lfactSum.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from fisher_test_sim.cpp:15:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from qqnorm.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from gpuRnMatrix.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from fisher_test_sim.cpp:15:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from qqnorm.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from lfactSum.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from gpuRnMatrix.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from fisher_test_sim.cpp:15:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from qqnorm.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from streams.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from streams.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from streams.cpp:1:
In file included from ./gpuRandom.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/getVCLptr.hpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include/gpuR/dynVCLMat.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
5 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c systemInfo.cpp -o systemInfo.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RViennaCL/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/gpuR/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c typeDef.cpp -o typeDef.o
5 warnings generated.
5 warnings generated.
5 warnings generated.
5 warnings generated.
5 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o clrng.so RcppExports.o fisher_test_sim.o gpuRnMatrix.o lfactSum.o mrg31k3pkernelString.o qqnorm.o streams.o systemInfo.o typeDef.o -framework OpenCL -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
Makevars:20: warning: overriding commands for target `../inst/include/loader/libOpenCL.a'
Makevars:9: warning: ignoring old commands for target `../inst/include/loader/libOpenCL.a'
Makevars:31: warning: overriding commands for target `../inst/include/loader/libOpenCL.a'
Makevars:20: warning: ignoring old commands for target `../inst/include/loader/libOpenCL.a'
Makevars:42: warning: overriding commands for target `../inst/include/loader/libOpenCL.a'
Makevars:31: warning: ignoring old commands for target `../inst/include/loader/libOpenCL.a'
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/clrng.Rcheck/00LOCK-clrng/00new/clrng/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clrng)