• using R version 4.3.0 beta (2023-04-08 r84203)
• using platform: x86_64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.3 (clang-1403.0.22.14.1)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3
• using session charset: UTF-8
• checking for file ‘clValid/DESCRIPTION’ ... OK
• this is package ‘clValid’ version ‘0.7’
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘moe430a.db’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘clValid’ can be installed ... [3s/3s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/3s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [6s/7s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [7s/9s] OK   ‘clValid.Rnw’... [7s/9s] OK
• checking re-building of vignette outputs ... [15s/17s] NOTE Error(s) in re-building vignettes: --- re-building ‘clValid.Rnw’ using Sweave Loading required package: cluster Read 7 items Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’:     IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’:     Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,     as.data.frame, basename, cbind, colnames, dirname, do.call,     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,     tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor     Vignettes contain introductory material; view with     'browseVignettes()'. To cite Bioconductor, see     'citation("Biobase")', and for packages 'citation("pkgname")'. Attaching package: ‘S4Vectors’ The following object is masked from ‘package:utils’:     findMatches The following objects are masked from ‘package:base’:     I, expand.grid, unname Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘AnnotationDbi’ Loading required package: RankAggreg Error: processing vignette 'clValid.Rnw' failed with diagnostics: Running 'texi2dvi' on 'clValid.tex' failed. LaTeX errors: ! LaTeX Error: File `relsize.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *>           l.28 \usepackage                 [mathcal]{euscript}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘clValid.Rnw’ SUMMARY: processing the following file failed:   ‘clValid.Rnw’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/5s] OK
• DONE Status: 2 NOTEs
• using check arguments '--no-clean-on-error '