Check results for 'bage'

using R version 4.3.3 (2024-02-29)
using platform: x86_64-apple-darwin20 (64-bit)
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘bage/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘bage’ version ‘0.9.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘bage’ can be installed ... [120s/188s] OK See the install log for details.
used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
used SDK: ‘MacOSX11.3.sdk’
checking installed package size ... NOTE installed size is 77.6Mb sub-directories of 1Mb or more: doc 4.9Mb libs 71.2Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/1s] OK
checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
checking whether the package can be unloaded cleanly ... [1s/1s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
checking loading without being on the library search path ... [1s/1s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [16s/25s] OK
checking Rd files ... [1s/1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [1s/2s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking compiled code ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [15s/26s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [69s/138s] ERROR Running ‘testthat.R’ [69s/137s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(bage) Loading required package: rvec Attaching package: 'rvec' The following objects are masked from 'package:stats': sd, var The following object is masked from 'package:base': rank > > test_check("bage") [ FAIL 11 | WARN 0 | SKIP 7 | PASS 2246 ] ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ • On CRAN (7): 'test-bage_mod-methods.R:2242:5', 'test-bage_mod-methods.R:2257:5', 'test-bage_prior-methods.R:10095:3', 'test-bage_ssvd-methods.R:162:3', 'test-make-inputs.R:1719:3', 'test-make-inputs.R:1728:3', 'test-make-inputs.R:1735:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bage_prior-methods.R:1701:3'): 'draw_vals_effect' works with bage_prior_svd_rw2random - age and sex ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::draw_vals_effect(...) at test-bage_prior-methods.R:1701:3 2. └─bage:::draw_vals_effect.bage_prior_svd_rw2random(...) 3. └─bage:::make_matrix_effectfree_effect_inner(...) 4. ├─bage:::make_matrix_sub_orig(...) 5. └─bage:::make_matrix_sub_orig.bage_prior_svd_rw2random(...) 6. └─bage:::make_matrix_sub_orig_svd(...) 7. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:1739:3'): 'draw_vals_effect' works with bage_prior_svd_rw2zero - age and sex ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::draw_vals_effect(...) at test-bage_prior-methods.R:1739:3 2. └─bage:::draw_vals_effect.bage_prior_svd_rw2zero(...) 3. └─bage:::make_matrix_effectfree_effect_inner(...) 4. ├─bage:::make_matrix_sub_orig(...) 5. └─bage:::make_matrix_sub_orig.bage_prior_svd_rw2zero(...) 6. └─bage:::make_matrix_sub_orig_svd(...) 7. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:4835:3'): 'forecast_term' works with bage_prior_svd_ar - con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::forecast_term(...) at test-bage_prior-methods.R:4835:3 2. └─bage:::forecast_term.bage_prior_svd_ar(...) 3. ├─bage:::make_matrix_effectfree_effect(...) 4. └─bage:::make_matrix_effectfree_effect.bage_prior_svd_ar(...) 5. └─bage:::make_matrix_effectfree_effect_inner(...) 6. ├─bage:::make_matrix_sub_orig(...) 7. └─bage:::make_matrix_sub_orig.bage_prior_svd_ar(...) 8. └─bage:::make_matrix_sub_orig_svd(...) 9. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:4926:3'): 'forecast_term' works with bage_prior_svd_rwrandom - con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::forecast_term(...) at test-bage_prior-methods.R:4926:3 2. └─bage:::forecast_term.bage_prior_svd_rwrandom(...) 3. └─bage:::make_matrix_effectfree_effect_inner(...) 4. ├─bage:::make_matrix_sub_orig(...) 5. └─bage:::make_matrix_sub_orig.bage_prior_svd_rwrandom(...) 6. └─bage:::make_matrix_sub_orig_svd(...) 7. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:4989:3'): 'forecast_term' works with bage_prior_svd_rw2zero - con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::forecast_term(...) at test-bage_prior-methods.R:4989:3 2. └─bage:::forecast_term.bage_prior_svd_rw2zero(...) 3. └─bage:::make_matrix_effectfree_effect_inner(...) 4. ├─bage:::make_matrix_sub_orig(...) 5. └─bage:::make_matrix_sub_orig.bage_prior_svd_rw2zero(...) 6. └─bage:::make_matrix_sub_orig_svd(...) 7. └─base::crossprod(m_constr, ans) ── Error ('test-bage_prior-methods.R:9869:3'): 'make_matrix_sub_orig' works with bage_prior_svd_ar - sex x time x age interaction, con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─bage:::make_matrix_sub_orig(...) at test-bage_prior-methods.R:9869:3 2. └─bage:::make_matrix_sub_orig.bage_prior_svd_ar(...) 3. └─bage:::make_matrix_sub_orig_svd(...) 4. └─base::crossprod(m_constr, ans) ── Error ('test-mapping-matrices.R:789:3'): 'make_matrix_effectfree_effect' works with SVD-based matrix_sub_orig, con is 'by' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. └─bage:::make_matrix_effectfree_effect_inner(...) at test-mapping-matrices.R:789:3 2. ├─bage:::make_matrix_sub_orig(...) 3. └─bage:::make_matrix_sub_orig.bage_prior_svd_rwrandom(...) 4. └─bage:::make_matrix_sub_orig_svd(...) 5. └─base::crossprod(m_constr, ans) ── Error ('test-mapping-matrices.R:864:3'): 'make_matrix_perm_along_to_front' works with 2 dimensions, along second ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─testthat::expect_identical(as.matrix(crossprod(m)), diag(6)) at test-mapping-matrices.R:864:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::as.matrix(crossprod(m)) 5. └─base::crossprod(m) ── Error ('test-mapping-matrices.R:872:3'): 'make_matrix_perm_along_to_front' works with 3 dimensions, along second ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. ├─testthat::expect_identical(as.matrix(crossprod(m)), diag(12)) at test-mapping-matrices.R:872:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::as.matrix(crossprod(m)) 5. └─base::crossprod(m) ── Error ('test-mapping-matrices.R:911:3'): 'make_matrix_sub_orig_svd' works with bage_prior_svd_ar - time x age interaction, con is 'none' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. └─bage:::make_matrix_sub_orig_svd(...) at test-mapping-matrices.R:911:3 2. └─base::crossprod(m_constr, ans) ── Error ('test-mapping-matrices.R:928:3'): 'make_matrix_sub_orig_svd' works with bage_prior_svd_ar - sex x time x age interaction, con is 'none' ── Error in `crossprod(x, y)`: requires numeric/complex matrix/vector arguments Backtrace: ▆ 1. └─bage:::make_matrix_sub_orig_svd(...) at test-mapping-matrices.R:928:3 2. └─base::crossprod(m_constr, ans) [ FAIL 11 | WARN 0 | SKIP 7 | PASS 2246 ] Error: Test failures Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking re-building of vignette outputs ... [204s/320s] OK
checking PDF version of manual ... [10s/10s] OK
DONE Status: 1 ERROR, 1 NOTE
using check arguments '--no-clean-on-error '