• using R version 4.3.2 (2023-10-31)
• using platform: x86_64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘aroma.core/DESCRIPTION’ ... OK
• this is package ‘aroma.core’ version ‘3.3.1’
• checking package namespace information ... OK
• checking package dependencies ... NOTE Packages suggested but not available for checking:   'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘aroma.core’ can be installed ... [17s/30s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking startup messages can be suppressed ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/45s] OK
• checking Rd files ... [2s/3s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘GLAD’
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [4s/6s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [16s/23s] OK   Running ‘PairedPSCNData,SEG.R’ [0s/0s]   Running ‘PairedPSCNData.R’ [0s/0s]   Running ‘RawCopyNumbers,states.R’ [1s/2s]   Running ‘RawCopyNumbers.R’ [1s/2s]   Running ‘RawGenomicSignals.R’ [1s/1s]   Running ‘RawGenomicSignals.SEG,MP.R’ [1s/2s]   Running ‘RawGenomicSignals.SEG.R’ [1s/2s]   Running ‘RichDataFrame.R’ [1s/1s]   Running ‘SegmentedCopyNumbers.R’ [1s/2s]   Running ‘aromaSettings.R’ [1s/1s]   Running ‘binScatter.R’ [2s/3s]   Running ‘colBinnedSmoothing.R’ [1s/1s]   Running ‘colKernelSmoothing.R’ [1s/1s]   Running ‘fitGenotypeCone.R’ [1s/1s]   Running ‘fitMultiDimensionalCone.R’ [1s/2s]   Running ‘matrixBlockPolish.R’ [1s/2s]   Running ‘mergeBoxplotStats.R’ [1s/1s]
• checking PDF version of manual ... [15s/22s] OK
• DONE Status: 2 NOTEs
• using check arguments '--no-clean-on-error '