* installing *source* package ‘SplitGLM’ ...
** package ‘SplitGLM’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch x86_64 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... clang++ -arch x86_64 -std=gnu++17 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdint.h... (cached) yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking climits usability... yes
checking climits presence... yes
checking for climits... yes
Type unsigned long long is supported
uint16_t and unit8_t are available in stdint.h
uint16_t and unit8_t are available in inttypes.h
Found builtin CTZ method (for unsigned long)
Found builtin CTZ method (for unsigned long long)
checking for ffsl... yes
checking for ffsll... yes
Found builtin popcount method (for unsigned long)
Found builtin popcount method (for unsigned long long)
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for clang++ -arch x86_64 -std=gnu++17 option to support OpenMP... unsupported
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/autoconfig.h
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CV_Split_WEN.cpp -o CV_Split_WEN.o
In file included from CV_Split_WEN.cpp:15:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
# define ARMA_DONT_USE_OPENMP
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CV_Split_WEN_Main.cpp -o CV_Split_WEN_Main.o
In file included from CV_Split_WEN_Main.cpp:15:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
# define ARMA_DONT_USE_OPENMP
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CV_WEN.cpp -o CV_WEN.o
In file included from CV_WEN.cpp:14:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
# define ARMA_DONT_USE_OPENMP
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
^
In file included from CV_WEN.cpp:17:
./CV_WEN.hpp:45:15: warning: private field 'index' is not used [-Wunused-private-field]
arma::uword index;
^
./CV_WEN.hpp:46:15: warning: private field 'n_threads' is not used [-Wunused-private-field]
arma::uword n_threads;
^
3 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Split_WEN.cpp -o Split_WEN.o
In file included from Split_WEN.cpp:12:
In file included from ./Split_WEN.hpp:17:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
# define ARMA_DONT_USE_OPENMP
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Split_WEN_Main.cpp -o Split_WEN_Main.o
In file included from Split_WEN_Main.cpp:15:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
# define ARMA_DONT_USE_OPENMP
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c WEN.cpp -o WEN.o
In file included from WEN.cpp:12:
In file included from ./WEN.hpp:17:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
# define ARMA_DONT_USE_OPENMP
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
^
In file included from WEN.cpp:12:
./WEN.hpp:40:15: warning: private field 'beta_size' is not used [-Wunused-private-field]
arma::uword beta_size; // Number of coefficients
^
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o SplitGLM.so CV_Split_WEN.o CV_Split_WEN_Main.o CV_WEN.o RcppExports.o Split_WEN.o Split_WEN_Main.o WEN.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/SplitGLM.Rcheck/00LOCK-SplitGLM/00new/SplitGLM/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SplitGLM)