- using R version 4.3.0 beta (2023-04-08 r84203)
- using platform: x86_64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3
- using session charset: UTF-8
- checking for file ‘SVMMaj/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘SVMMaj’ version ‘0.2.9.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘SVMMaj’ can be installed ... [5s/7s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [5s/6s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) diabetes.Rd:18: Escaped LaTeX specials: \^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [8s/9s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [9s/9s] OK
Running ‘test_all.R’ [9s/9s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [117s/115s] OK
‘paper.Rnw’... [117s/115s] OK
- checking re-building of vignette outputs ... [118s/106s] NOTE
Error(s) in re-building vignettes:
--- re-building ‘paper.Rnw’ using Sweave
Warning: The dot-dot notation (`..count..`) was deprecated in ggplot2 3.4.0.
ℹ Please use `after_stat(count)` instead.
ℹ The deprecated feature was likely used in the SVMMaj package.
Please report the issue to the authors.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Scale for y is already present.
Adding another scale for y, which will replace the existing scale.
Attaching package: ‘kernlab’
The following object is masked from ‘package:ggplot2’:
alpha
Error: processing vignette 'paper.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'paper.tex' failed.
LaTeX errors:
! LaTeX Error: File `relsize.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.987 \ifthenelse
{\boolean{algocf@slide}}{\RequirePackage{color}}{}%^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘paper.Rnw’
SUMMARY: processing the following file failed:
‘paper.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [5s/7s] OK
- DONE
Status: 2 NOTEs
- using check arguments '--no-clean-on-error '