- using R version 4.3.3 (2024-02-29)
- using platform: x86_64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘PointedSDMs/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘PointedSDMs’ version ‘2.1.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘PointedSDMs’ can be installed ... [27s/40s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [7s/10s] OK
- checking whether the package can be loaded with stated dependencies ... [7s/9s] OK
- checking whether the package can be unloaded cleanly ... [7s/12s] OK
- checking whether the namespace can be loaded with stated dependencies ... [7s/9s] OK
- checking whether the namespace can be unloaded cleanly ... [7s/10s] OK
- checking loading without being on the library search path ... [7s/12s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [19s/31s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘INLA’
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/2s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [7s/11s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [7s/9s] OK
Running ‘testthat.R’ [7s/9s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [29s/43s] WARNING
Errors in running code in vignettes:
when running code in ‘Marked_Point_Process.Rmd’
...
> library(ggplot2)
> library(inlabru)
> library(INLA)
When sourcing ‘Marked_Point_Process.R’:
Error: there is no package called ‘INLA’
Execution halted
when running code in ‘Setophaga.Rmd’
...
> args(datasetOut)
function (model, dataset, predictions = TRUE)
NULL
> library(INLA)
When sourcing ‘Setophaga.R’:
Error: there is no package called ‘INLA’
Execution halted
when running code in ‘Solitary_tinamou.Rmd’
...
terra 1.7.78
> library(ggpolypath)
Loading required package: ggplot2
> library(INLA)
When sourcing ‘Solitary_tinamou.R’:
Error: there is no package called ‘INLA’
Execution halted
when running code in ‘Spatiotemporal_example.Rmd’
...
> library(ggplot2)
> library(spocc)
> library(INLA)
When sourcing ‘Spatiotemporal_example.R’:
Error: there is no package called ‘INLA’
Execution halted
‘Marked_Point_Process.Rmd’ using ‘UTF-8’... failed
‘Setophaga.Rmd’ using ‘UTF-8’... failed
‘Solitary_tinamou.Rmd’ using ‘UTF-8’... failed
‘Spatiotemporal_example.Rmd’ using ‘UTF-8’... failed
- checking re-building of vignette outputs ... [25s/34s] OK
- checking PDF version of manual ... [10s/14s] OK
- DONE
Status: 1 WARNING, 2 NOTEs
- using check arguments '--no-clean-on-error '