* installing *source* package ‘OncoBayes2’ ... ** package ‘OncoBayes2’ successfully unpacked and MD5 sums checked ** using staged installation DIAGNOSTIC(S) FROM PARSER: Info: integer division implicitly rounds to integer. Found int division: current / base Positive values rounded down, negative values rounded up or down in platform-dependent way. Info: integer division implicitly rounds to integer. Found int division: left_ind + right_ind / 2 Positive values rounded down, negative values rounded up or down in platform-dependent way. ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0 -fPIC -falign-functions=64 -Wall -g -O2 -c numeric_utils.cpp -o numeric_utils.o In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Core:540: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/LU:47: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Jacobi:29: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Householder:27: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SVD:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Geometry:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Eigenvalues:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -D_HAS_AUTO_PTR_ETC=0 -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_blrm_exnex.cc -o stanExports_blrm_exnex.o In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:66: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:27: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/OrderingMethods:71: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:33: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseQR:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/CholmodSupport:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:39: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/Polynomials:135: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Core:540: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/LU:47: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Jacobi:29: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Householder:27: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SVD:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Geometry:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Eigenvalues:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:66: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:27: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/OrderingMethods:71: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:33: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseQR:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/../../fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ 22 warnings generated. In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/CholmodSupport:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:39: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/Polynomials:135: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:28: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:6: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/err/check_matching_dims.hpp:33:8: warning: unused variable 'error' [-Wunused-variable] bool error = false; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:54: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/profiling.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/err.hpp:50: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/err/hmm_check.hpp:33:7: warning: unused variable 'n_transitions' [-Wunused-variable] int n_transitions = log_omegas.cols() - 1; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun.hpp:118: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/gp_matern52_cov.hpp:275:10: warning: unused variable 'neg_root_5' [-Wunused-variable] double neg_root_5 = -root_5; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun.hpp:183: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/log_mix.hpp:86:13: warning: unused variable 'N' [-Wunused-variable] const int N = stan::math::size(theta); ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:87: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/double_exponential_cdf.hpp:82:10: warning: unused variable 'N' [-Wunused-variable] size_t N = max_size(y, mu, sigma); ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:128: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp:98:7: warning: unused variable 'n' [-Wunused-variable] int n = G.rows(); // number of states ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:139: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/hmm_marginal.hpp:26:13: warning: unused variable 'n_states' [-Wunused-variable] const int n_states = omegas.rows(); ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:315: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/std_normal_rng.hpp:23:22: warning: unused variable 'function' [-Wunused-variable] static const char* function = "std_normal_rng"; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:335: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:72:10: warning: unused variable 'ck' [-Wunused-variable] double ck = 50; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:1238:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/indexing.hpp:9: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:610:13: warning: unused variable 'cols' [-Wunused-variable] const int cols = rvalue_index_size(idxs.tail_.head_, x_ref.cols()); ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/indexing.hpp:10: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:241:22: warning: unused variable 'x_cols' [-Wunused-variable] const Eigen::Index x_cols = x.cols(); ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:88:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] [avi = a.vi_, b](const auto& vi) mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_minus_equal.hpp:24:16: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here vi_ = (*this - b).vi_; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/core/complex_base.hpp:136:9: note: in instantiation of member function 'stan::math::var_value<double>::operator-=' requested here re_ -= x; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:24:5: note: in instantiation of function template specialization 'stan::math::complex_base<stan::math::var_value<double>>::operator-=<int>' requested here y -= rhs; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/core/operator_subtraction.hpp:55:20: note: in instantiation of function template specialization 'stan::math::internal::complex_subtract<std::complex<stan::math::var>, int>' requested here return internal::complex_subtract(x, y); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/acosh.hpp:105:31: note: in instantiation of function template specialization 'stan::math::operator-<stan::math::var_value<double>, int>' requested here auto y = log(z + sqrt(z * z - 1)); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun/acosh.hpp:94:32: note: in instantiation of function template specialization 'stan::math::internal::complex_acosh<stan::math::var_value<double>>' requested here return stan::math::internal::complex_acosh(z); ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:28: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] [avi = a.vi_, b](const auto& vi) mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun/grad_inc_beta.hpp:45:43: note: in instantiation of function template specialization 'stan::math::operator+<int, nullptr>' requested here grad_2F1(dF1, dF2, a + b, var(1.0), a + 1, z); ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:28: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_addition.hpp:84:43: warning: lambda capture 'b' is not used [-Wunused-lambda-capture] [avi = a.vi_, b](const auto& vi) mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/trigamma.hpp:63:31: note: in instantiation of function template specialization 'stan::math::operator+<double, nullptr>' requested here value = -trigamma_impl(-x + 1.0) + square(pi() / sin(-pi() * x)); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun/trigamma.hpp:23:44: note: in instantiation of function template specialization 'stan::math::trigamma_impl<stan::math::var_value<double>>' requested here inline var trigamma(const var& u) { return trigamma_impl(u); } ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/indexing.hpp:9: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:140:14: warning: unused variable 'v_size' [-Wunused-variable] const auto v_size = v.size(); ^ ./stanExports_blrm_exnex.h:4427:78: note: in instantiation of function template specialization 'stan::model::rvalue<Eigen::Matrix<double, -1, 1, 0> &, nullptr>' requested here stan::math::exp(log_sum_exp(stan::model::rvalue(log_EX_prob_mix, stan::model::cons_list(stan::model::index_multi(get_base1(mix_is_EX_beta, i, "mix_is_EX_beta", 1)), stan::model::nil_index_list()), "log_EX_prob_mix"))), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/io/random_var_context.hpp:77:11: note: in instantiation of function template specialization 'model_blrm_exnex_namespace::model_blrm_exnex::write_array<boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here model.write_array(rng, unconstrained_params_, int_params, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/util/initialize.hpp:93:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context<model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here stan::io::random_var_context random_context(model, rng, init_radius, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here std::vector<double> cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_blrm_exnex_namespace::model_blrm_exnex>' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_blrm_exnex.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler) ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_division.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/operator_subtraction.hpp:113:43: warning: lambda capture 'a' is not used [-Wunused-lambda-capture] [bvi = b.vi_, a](const auto& vi) mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/cholesky_corr_constrain.hpp:69:50: note: in instantiation of function template specialization 'stan::math::operator-<double, nullptr>' requested here x.coeffRef(i, j) = z.coeff(k++) * sqrt(1.0 - sum_sqs); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/io/reader.hpp:1206:24: note: in instantiation of function template specialization 'stan::math::cholesky_corr_constrain<Eigen::Map<const Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>, 0>, nullptr>' requested here return stan::math::cholesky_corr_constrain(vector((K * (K - 1)) / 2), K, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_blrm_exnex_namespace::model_blrm_exnex::log_prob<true, true, stan::math::var_value<double>>' requested here var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_blrm_exnex_namespace::model_blrm_exnex>' requested here log_prob = stan::model::log_prob_grad<true, Jacobian>( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here std::vector<double> cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_blrm_exnex_namespace::model_blrm_exnex>' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_blrm_exnex.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler) ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:52: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:83:59: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] container_operands_(index_apply<N_containers>([&, this](auto... Is) { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/functor/operands_and_partials.hpp:167:16: note: in instantiation of function template specialization 'stan::math::precomputed_gradients_vari_template<>::precomputed_gradients_vari_template<>' requested here return new precomputed_gradients_vari_template< ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/binomial_logit_lpmf.hpp:102:23: note: in instantiation of member function 'stan::math::operands_and_partials<const Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0> &, double, double, double, double, stan::math::var_value<double>>::build' requested here return ops_partials.build(logp); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/binomial_logit_log.hpp:16:10: note: in instantiation of function template specialization 'stan::math::binomial_logit_lpmf<true, std::vector<int>, std::vector<int>, Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>' requested here return binomial_logit_lpmf<propto, T_n, T_N, T_prob>(n, N, alpha); ^ ./stanExports_blrm_exnex.h:3799:36: note: in instantiation of function template specialization 'stan::math::binomial_logit_log<true, std::vector<int>, std::vector<int>, Eigen::Matrix<stan::math::var_value<double>, -1, 1, 0>>' requested here lp_accum__.add(binomial_logit_log<propto__>(r, n, theta)); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_blrm_exnex_namespace::model_blrm_exnex::log_prob<true, true, stan::math::var_value<double>>' requested here var adLogProb = model.template log_prob<propto, jacobian_adjust_transform>( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/util/initialize.hpp:166:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad<true, true, model_blrm_exnex_namespace::model_blrm_exnex>' requested here log_prob = stan::model::log_prob_grad<true, Jacobian>( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize<true, model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here std::vector<double> cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:467:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose<model_blrm_exnex_namespace::model_blrm_exnex>' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:1201:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command<model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_blrm_exnex.cc:15:87: note: in instantiation of member function 'rstan::stan_fit<model_blrm_exnex_namespace::model_blrm_exnex, boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399>>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit<stan_model, boost::random::ecuyer1988> ::call_sampler) ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:52: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/precomputed_gradients.hpp:86:60: warning: lambda capture 'this' is not used [-Wunused-lambda-capture] container_gradients_(index_apply<N_containers>([&, this](auto... Is) { ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:59: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: 'static' function 'set_zero_all_adjoints' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] static void set_zero_all_adjoints() { ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun.hpp:110: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/generalized_inverse.hpp:34:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] using value_t = value_type_t<EigMat>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun.hpp:319: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/tail.hpp:46:9: warning: unused type alias 'idx_t' [-Wunused-local-typedef] using idx_t = index_type_t<std::vector<T>>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun.hpp:32: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun/cholesky_decompose.hpp:83:11: warning: unused type alias 'Block_' [-Wunused-local-typedef] using Block_ = Eigen::Block<Eigen::MatrixXd>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun.hpp:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun/cholesky_factor_constrain.hpp:32:9: warning: unused type alias 'T_scalar' [-Wunused-local-typedef] using T_scalar = value_type_t<T>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun.hpp:71: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/fun/generalized_inverse.hpp:64:9: warning: unused type alias 'value_t' [-Wunused-local-typedef] using value_t = value_type_t<VarMat>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp:59:9: warning: unused type alias 'T_y_val' [-Wunused-local-typedef] using T_y_val = ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/beta_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/beta_lpdf.hpp:50:9: warning: unused type alias 'T_partials_matrix' [-Wunused-local-typedef] using T_partials_matrix = Eigen::Matrix<T_partials_return, Eigen::Dynamic, 1>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/beta_proportion_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/beta_proportion_lpdf.hpp:55:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:63: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/cauchy_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/cauchy_lpdf.hpp:45:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:74: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/dirichlet_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/dirichlet_lpdf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:91: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/double_exponential_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/double_exponential_lpdf.hpp:44:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:111: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/frechet_cdf.hpp:30:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array<T_partials_return, Eigen::Dynamic, 1>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:245: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/ordered_logistic_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/ordered_logistic_lpmf.hpp:76:9: warning: unused type alias 'T_partials_array' [-Wunused-local-typedef] using T_partials_array = Eigen::Array<T_partials_return, -1, 1>; ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob.hpp:277: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp:62:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] using T_alpha_val = typename std::conditional_t< ^ In file included from stanExports_blrm_exnex.cc:5: In file included from ./stanExports_blrm_exnex.h:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/model_header.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/indexing.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/indexing/lvalue_varmat.hpp:349:9: warning: unused type alias 'pair_type' [-Wunused-local-typedef] using pair_type = std::pair<int, arena_vec>; ^ In file included from stanExports_blrm_exnex.cc:5: ./stanExports_blrm_exnex.h:266:30: warning: unused typedef 'fun_return_scalar_t__' [-Wunused-local-typedef] typedef local_scalar_t__ fun_return_scalar_t__; ^ ./stanExports_blrm_exnex.h:1412:30: warning: unused typedef 'fun_return_scalar_t__' [-Wunused-local-typedef] typedef local_scalar_t__ fun_return_scalar_t__; ^ ./stanExports_blrm_exnex.h:1481:30: warning: unused typedef 'fun_return_scalar_t__' [-Wunused-local-typedef] typedef local_scalar_t__ fun_return_scalar_t__; ^ ./stanExports_blrm_exnex.h:1527:30: warning: unused typedef 'fun_return_scalar_t__' [-Wunused-local-typedef] typedef local_scalar_t__ fun_return_scalar_t__; ^ ./stanExports_blrm_exnex.h:3294:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] typedef double local_scalar_t__; ^ 62 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o OncoBayes2.so RcppExports.o numeric_utils.o stanExports_blrm_exnex.o -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/ -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/ -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/OncoBayes2.Rcheck/00LOCK-OncoBayes2/00new/OncoBayes2/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading DIAGNOSTIC(S) FROM PARSER: Info: integer division implicitly rounds to integer. Found int division: current / base Positive values rounded down, negative values rounded up or down in platform-dependent way. Info: integer division implicitly rounds to integer. Found int division: left_ind + right_ind / 2 Positive values rounded down, negative values rounded up or down in platform-dependent way. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OncoBayes2)