• using R version 4.3.0 beta (2023-04-08 r84203)
• using platform: x86_64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.3 (clang-1403.0.22.14.1)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3
• using session charset: UTF-8
• checking for file ‘DOBAD/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘DOBAD’ version ‘1.0.6’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘DOBAD’ can be installed ... [7s/9s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'add.joint.mean.many':   ‘all.cond.mean.PO’ ‘all.cond.mean2.PO’ The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [48s/68s] OK   ‘BD_EM.Rnw’... [39s/55s] OK   ‘BD_EM_wImmig.Rnw’... [4s/6s] OK   ‘BD_MCMC.Rnw’... [2s/3s] OK   ‘sim_condBD.Rnw’... [4s/5s] OK
• checking re-building of vignette outputs ... [58s/80s] NOTE Error(s) in re-building vignettes: --- re-building ‘BD_EM.Rnw’ using Sweave Loading required package: numDeriv Error: processing vignette 'BD_EM.Rnw' failed with diagnostics: Running 'texi2dvi' on 'BD_EM.tex' failed. LaTeX errors: ! LaTeX Error: File `versions.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *>           l.19 \usepackage                 {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘BD_EM.Rnw’ --- re-building ‘BD_EM_wImmig.Rnw’ using Sweave Loading required package: numDeriv Error: processing vignette 'BD_EM_wImmig.Rnw' failed with diagnostics: Running 'texi2dvi' on 'BD_EM_wImmig.tex' failed. LaTeX errors: ! LaTeX Error: File `versions.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *>           l.20 \usepackage                 {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘BD_EM_wImmig.Rnw’ --- re-building ‘BD_MCMC.Rnw’ using Sweave Loading required package: numDeriv Error: processing vignette 'BD_MCMC.Rnw' failed with diagnostics: Running 'texi2dvi' on 'BD_MCMC.tex' failed. LaTeX errors: ! LaTeX Error: File `versions.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *>           l.20 \usepackage                 {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘BD_MCMC.Rnw’ --- re-building ‘sim_condBD.Rnw’ using Sweave Loading required package: numDeriv Error: processing vignette 'sim_condBD.Rnw' failed with diagnostics: Running 'texi2dvi' on 'sim_condBD.tex' failed. LaTeX errors: ! LaTeX Error: File `versions.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *>           l.20 \usepackage                 {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘sim_condBD.Rnw’ SUMMARY: processing the following files failed:   ‘BD_EM.Rnw’ ‘BD_EM_wImmig.Rnw’ ‘BD_MCMC.Rnw’ ‘sim_condBD.Rnw’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/7s] OK
• DONE Status: 2 NOTEs
• using check arguments '--no-clean-on-error '