- using R version 4.3.0 beta (2023-04-08 r84203)
- using platform: x86_64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3
- using session charset: UTF-8
- checking for file ‘DBR/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘DBR’ version ‘1.4.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘DBR’ can be installed ... [2s/2s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking startup messages can be suppressed ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/2s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [9s/13s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [13s/19s] OK
‘DBR.Rnw’ using ‘UTF-8’... [13s/19s] OK
- checking re-building of vignette outputs ... [21s/28s] NOTE
Error(s) in re-building vignettes:
--- re-building ‘DBR.Rnw’ using Sweave
DBR 1.4.1
Bayesian Discretized Beta Regression for the Analysis of Ratings Data
Warning in cor.test.default(pain$severity, pain$interference, method = "spearman") :
Cannot compute exact p-value with ties
Warning in cor.test.default(pain$age, pain$interference, method = "spearman") :
Cannot compute exact p-value with ties
Warning in ks.test.default(pred_sample, pain$interference) :
p-value will be approximate in the presence of ties
Error: processing vignette 'DBR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'DBR.tex' failed.
LaTeX errors:
! LaTeX Error: File `breqn.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.18 \usepackage
{atbegshi}% http://ctan.org/pkg/atbegshi^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘DBR.Rnw’
SUMMARY: processing the following file failed:
‘DBR.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [4s/4s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '