Check results for 'BIDistances'

using R version 4.3.0 (2023-04-21)
using platform: x86_64-apple-darwin20 (64-bit)
R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘BIDistances/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘BIDistances’ version ‘0.0.2’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘BIDistances’ can be installed ... [2s/2s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [2s/2s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking data for ASCII and uncompressed saves ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [1s/1s] ERROR Running examples in ‘BIDistances-Ex.R’ failed The error most likely occurred in: > ### Name: EuclideanDistances_GPU > ### Title: EuclideanDistances_GPU > ### Aliases: EuclideanDistances_GPU > ### Keywords: Distance Distancematrix Euclidean OpenCL GPU HPC > > ### ** Examples > > if(isTRUE(require("OpenCL"))){ + if(Sys.info()[1] == "Windows"){ + tryCatch({ + dyn.load("C:/Windows/System32/OpenCL.dll", FALSE, TRUE) + }, error = function(e) { + warning("EuclideanDistances_GPU: OpenCL.dll could not be loaded with error:") + warning(e) + }) + } + library(OpenCL) + AllDevices = unlist(lapply(unlist(OpenCL::oclPlatforms()), OpenCL::oclDevices)) + Device = AllDevices[length(AllDevices)][[1]] + ctx = OpenCL::oclContext(device = Device, precision = "double") + Data = as.matrix(iris[,1:4]) + Weights = rep(1, 4) + oclDM = EuclideanDistances_GPU(Data = Data, Weights = Weights, ctx = ctx) + } Loading required package: OpenCL Warning in OpenCL::oclContext(device = Device, precision = "double") : OpenCL implementation does not support out-of-order execution, disabling it <program source>:3:479: error: call to '__cl_sqrt' is ambiguous __kernel void weighted_euclidean( __global numeric* output, const unsigned int count, __global numeric* input, __global numeric* weights, const int N, const int DIM){ size_t i = get_global_id(0); size_t j = get_global_id(1); if(i < N && i == j){ output[i*N+i] = 0; } if(i < N && j < i){ double tmpRes = 0; for(int k = 0; k < DIM; ++k){ tmpRes = tmpRes + weights[k] * (input[i+k*N] - input[j+k*N]) * (input[i+k*N] - input[j+k*N]); } tmpRes = sqrt(tmpRes); output[j*N+i] = tmpRes; output[i*N+j] = tmpRes; }} ^~~~~~~~~~~~ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4788:23: note: expanded from macro 'sqrt' #define sqrt(__x) __cl_sqrt(__x) ^~~~~~~~~ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function __CLFN_FD_1FD(__cl_sqrt); ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:367:48: note: expanded from macro '__CLFN_FD_1FD' #define __CLFN_FD_1FD(name) float __OVERLOAD__ name(float x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:368:21: note: expanded from macro '__CLFN_FD_1FD' float2 __OVERLOAD__ name(float2 x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:369:21: note: expanded from macro '__CLFN_FD_1FD' float3 __OVERLOAD__ name(float3 x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:370:21: note: expanded from macro '__CLFN_FD_1FD' float4 __OVERLOAD__ name(float4 x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:371:21: note: expanded from macro '__CLFN_FD_1FD' float8 __OVERLOAD__ name(float8 x); \ ^ /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:4785:15: note: candidate function /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/A/lib/clang/3.5/include/cl_kernel.h:372:22: note: expanded from macro '__CLFN_FD_1FD' float16 __OVERLOAD__ name(float16 x); ^ <program source>:3:244: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'const int' __kernel void weighted_euclidean( __global numeric* output, const unsigned int count, __global numeric* input, __global numeric* weights, const int N, const int DIM){ size_t i = get_global_id(0); size_t j = get_global_id(1); if(i < N && i == j){ output[i*N+i] = 0; } if(i < N && j < i){ double tmpRes = 0; for(int k = 0; k < DIM; ++k){ tmpRes = tmpRes + weights[k] * (input[i+k*N] - input[j+k*N]) * (input[i+k*N] - input[j+k*N]); } tmpRes = sqrt(tmpRes); output[j*N+i] = tmpRes; output[i*N+j] = tmpRes; }} ~ ^ ~ <program source>:3:293: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'const int' __kernel void weighted_euclidean( __global numeric* output, const unsigned int count, __global numeric* input, __global numeric* weights, const int N, const int DIM){ size_t i = get_global_id(0); size_t j = get_global_id(1); if(i < N && i == j){ output[i*N+i] = 0; } if(i < N && j < i){ double tmpRes = 0; for(int k = 0; k < DIM; ++k){ tmpRes = tmpRes + weights[k] * (input[i+k*N] - input[j+k*N]) * (input[i+k*N] - input[j+k*N]); } tmpRes = sqrt(tmpRes); output[j*N+i] = tmpRes; output[i*N+j] = tmpRes; }} ~ ^ ~ Error in OpenCL::oclSimpleKernel(ctx, "weighted_euclidean", code) : clBuildProgram failed (with -11) Calls: EuclideanDistances_GPU -> withCallingHandlers -> <Anonymous> Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [0s/0s] NONE ‘BIDistances.Rmd’ using ‘UTF-8’... [0s/0s] OK
checking re-building of vignette outputs ... [10s/14s] OK
checking PDF version of manual ... [6s/8s] OK
DONE Status: 1 ERROR
using check arguments '--no-clean-on-error '