* installing *source* package ‘AntMAN’ ...
** package ‘AntMAN’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -DHAS_RCPP -fPIC -falign-functions=64 -Wall -g -O2 -c AntMan.cpp -o AntMan.o
In file included from AntMan.cpp:6:
In file included from ./Mixtures.h:10:
In file included from ./MixtureMultivariateBinomial.h:11:
./Mixture.h:150:10: warning: variable 'total_u' set but not used [-Wunused-but-set-variable]
double total_u = 0;
^
./Mixture.h:152:10: warning: variable 'total_mna' set but not used [-Wunused-but-set-variable]
double total_mna = 0;
^
AntMan.cpp:281:6: warning: variable 'q' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
if (mix_components_prior.containsElementNamed("Mstar")) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:319:39: note: uninitialized use occurs here
Prior* prior = new PriorDirac (*h,*q);
^
AntMan.cpp:281:2: note: remove the 'if' if its condition is always true
if (mix_components_prior.containsElementNamed("Mstar")) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:255:27: note: initialize the variable 'q' to silence this warning
dirac_gamma_q_param_t * q;
^
= nullptr
AntMan.cpp:345:13: warning: variable 'prior' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
} else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:351:9: note: uninitialized use occurs here
return prior;
^~~~~
AntMan.cpp:345:9: note: remove the 'if' if its condition is always true
} else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:345:13: warning: variable 'prior' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized]
} else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:351:9: note: uninitialized use occurs here
return prior;
^~~~~
AntMan.cpp:345:13: note: remove the '&&' if its condition is always true
} else if ((prior_type == "AM_mix_components_prior_dirac") && (weight_type == "AM_mix_weights_prior_gamma")) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AntMan.cpp:339:14: note: initialize the variable 'prior' to silence this warning
Prior* prior;
^
= nullptr
In file included from AntMan.cpp:6:
In file included from ./Mixtures.h:10:
In file included from ./MixtureMultivariateBinomial.h:11:
In file included from ./Mixture.h:13:
In file included from ./Prior.h:12:
./AntMANLogger.h:39:15: warning: private field '_max_size' is not used [-Wunused-private-field]
const size_t _max_size;
^
6 warnings generated.
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -DHAS_RCPP -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -DHAS_RCPP -fPIC -falign-functions=64 -Wall -g -O2 -c calcola_stirling260.cpp -o calcola_stirling260.o
clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o AntMAN.so AntMan.o RcppExports.o calcola_stirling260.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/AntMAN.Rcheck/00LOCK-AntMAN/00new/AntMAN/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AntMAN)