• using R version 4.3.3 (2024-02-29)
• using platform: aarch64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘uwot/DESCRIPTION’ ... OK
• this is package ‘uwot’ version ‘0.2.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘uwot’ can be installed ... [26s/28s] OK See the install log for details.
• used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used SDK: ‘MacOSX11.3.sdk’
• checking installed package size ... NOTE   installed size is 14.0Mb   sub-directories of 1Mb or more:     libs 13.0Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [10s/10s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [40s/41s] ERROR   Running ‘testthat.R’ [40s/41s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(uwot)   Loading required package: Matrix   >   > test_check("uwot")   [ FAIL 2 | WARN 0 | SKIP 0 | PASS 683 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_normlaplacian.R:36:5'): normalized laplacian ───────────────────   Error in `irlba::irlba(L, nv = n, nu = 0, maxit = iters)`: function 'as_cholmod_sparse' not provided by package 'Matrix'   Backtrace:       ▆    1. └─uwot:::irlba_tsvd_normalized_laplacian_init(sparse_m) at test_normlaplacian.R:36:5    2. └─uwot:::irlba_spectral_tsvd(L, ndim + 1)    3. ├─base::suppressWarnings(...)    4. │ └─base::withCallingHandlers(...)    5. └─irlba::irlba(L, nv = n, nu = 0, maxit = iters)   ── Error ('test_output.R:315:3'): (code run outside of `test_that()`) ──────────   Error in `irlba::irlba(L, nv = n, nu = 0, maxit = iters)`: function 'as_cholmod_sparse' not provided by package 'Matrix'   Backtrace:       ▆    1. └─uwot::umap(...) at test_output.R:315:3    2. └─uwot:::uwot(...)    3. └─uwot:::spectral_init(...)    4. └─uwot:::irlba_tsvd_normalized_laplacian_init(A, ndim, verbose = FALSE)    5. └─uwot:::irlba_spectral_tsvd(L, ndim + 1)    6. ├─base::suppressWarnings(...)    7. │ └─base::withCallingHandlers(...)    8. └─irlba::irlba(L, nv = n, nu = 0, maxit = iters)      [ FAIL 2 | WARN 0 | SKIP 0 | PASS 683 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [11s/12s] OK
• checking PDF version of manual ... [5s/5s] OK
• DONE Status: 1 ERROR, 1 NOTE
• using check arguments '--no-clean-on-error '