* installing *source* package ‘spsurv’ ...
** package ‘spsurv’ successfully unpacked and MD5 sums checked
** using staged installation
DIAGNOSTIC(S) FROM PARSER:
Info:
Left-hand side of sampling statement (~) may contain a non-linear transform of a parameter or local variable.
If it does, you need to include a target += statement with the log absolute determinant of the Jacobian of the transform.
Left-hand-side of sampling statement:
beta_std ~ normal(...)
Info:
Left-hand side of sampling statement (~) may contain a non-linear transform of a parameter or local variable.
If it does, you need to include a target += statement with the log absolute determinant of the Jacobian of the transform.
Left-hand-side of sampling statement:
beta_std ~ cauchy(...)
** libs
using C++ compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include' -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:1:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Core:540:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:2:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/LU:47:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Jacobi:29:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:43:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/QR:15:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Householder:27:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/QR:48:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:5:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SVD:48:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Geometry:58:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Eigenvalues:58:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:66:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/OrderingMethods:71:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseCholesky:43:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseQR:34:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:33:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/CholmodSupport:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:39:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
18 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include' -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_spbp.cc -o stanExports_spbp.o
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:1:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Core:540:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:2:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/LU:47:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Jacobi:29:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:43:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/QR:15:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Householder:27:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/QR:48:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:5:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SVD:48:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Geometry:58:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Eigenvalues:58:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:66:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/OrderingMethods:71:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseCholesky:43:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseQR:34:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:33:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/CholmodSupport:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:39:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:283:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/gaussian_dlm_obs_rng.hpp:138:7: warning: unused variable 'n' [-Wunused-variable]
int n = G.rows(); // number of states
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/columns_dot_self.hpp:8:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/dot_self.hpp:38:41: warning: all paths through this function will call itself [-Winfinite-recursion]
inline static double square(double x) { return square(x); }
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:70:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp:5:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/functor/cvodes_integrator.hpp:126:18: warning: unused variable 'coupled_size' [-Wunused-variable]
const size_t coupled_size = cvodes_data.coupled_ode_.size();
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function]
static void set_zero_all_adjoints() {
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:47:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:13: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
static void set_zero_all_adjoints_nested() {
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:278:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_log.hpp:5:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef]
using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>;
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:328:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:52:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef]
using T_alpha_val = typename std::conditional_t<
^
In file included from stanExports_spbp.cc:5:
In file included from ./stanExports_spbp.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:51:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/squared_distance.hpp:27:11: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
using idx_t = typename index_type<matrix_v>::type;
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/squared_distance.hpp:64:11: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
using idx_t = typename index_type<matrix_d>::type;
^
In file included from stanExports_spbp.cc:5:
./stanExports_spbp.h:779:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
typedef double local_scalar_t__;
^
28 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include' -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_spbp_frailty.cc -o stanExports_spbp_frailty.o
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:1:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Core:540:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:2:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/LU:47:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Jacobi:29:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:43:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/QR:15:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Householder:27:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/QR:48:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:5:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SVD:48:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Geometry:58:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Dense:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Eigenvalues:58:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:66:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/OrderingMethods:71:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseCholesky:43:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/SparseQR:34:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:33:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/CholmodSupport:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:39:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
#pragma clang diagnostic pop
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:283:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/gaussian_dlm_obs_rng.hpp:138:7: warning: unused variable 'n' [-Wunused-variable]
int n = G.rows(); // number of states
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/columns_dot_self.hpp:8:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/dot_self.hpp:38:41: warning: all paths through this function will call itself [-Winfinite-recursion]
inline static double square(double x) { return square(x); }
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:70:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp:5:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/functor/cvodes_integrator.hpp:126:18: warning: unused variable 'coupled_size' [-Wunused-variable]
const size_t coupled_size = cvodes_data.coupled_ode_.size();
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function]
static void set_zero_all_adjoints() {
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:47:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:13: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
static void set_zero_all_adjoints_nested() {
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:278:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_log.hpp:5:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef]
using T_partials_vec = typename Eigen::Matrix<T_partials_return, -1, 1>;
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:328:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:52:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef]
using T_alpha_val = typename std::conditional_t<
^
In file included from stanExports_spbp_frailty.cc:5:
In file included from ./stanExports_spbp_frailty.h:20:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:51:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/squared_distance.hpp:27:11: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
using idx_t = typename index_type<matrix_v>::type;
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/squared_distance.hpp:64:11: warning: unused type alias 'idx_t' [-Wunused-local-typedef]
using idx_t = typename index_type<matrix_d>::type;
^
In file included from stanExports_spbp_frailty.cc:5:
./stanExports_spbp_frailty.h:766:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
typedef double local_scalar_t__;
^
28 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o spsurv.so RcppExports.o stanExports_spbp.o stanExports_spbp_frailty.o -L/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib/ -Wl,-rpath,/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib/ -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/spsurv.Rcheck/00LOCK-spsurv/00new/spsurv/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
DIAGNOSTIC(S) FROM PARSER:
Info:
Left-hand side of sampling statement (~) may contain a non-linear transform of a parameter or local variable.
If it does, you need to include a target += statement with the log absolute determinant of the Jacobian of the transform.
Left-hand-side of sampling statement:
beta_std ~ normal(...)
Info:
Left-hand side of sampling statement (~) may contain a non-linear transform of a parameter or local variable.
If it does, you need to include a target += statement with the log absolute determinant of the Jacobian of the transform.
Left-hand-side of sampling statement:
beta_std ~ cauchy(...)
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spsurv)