* installing *source* package ‘rJava’ ... ** package ‘rJava’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang -arch arm64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to accept ISO C89... none needed checking how to run the C preprocessor... clang -arch arm64 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether clang -arch arm64 supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/bin/java' archiver : '/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/bin/jar' compiler : '/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/bin/javac' header prep.: '/usr/bin/javah' cpp flags : '-I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin' java libs : '-L/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/lib/server -ljvm' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether -Xrs will be used... yes checking whether JVM will be loaded dynamically... yes checking whether JNI programs can be compiled... yes checking whether JNI programs run... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether headless init is enabled... yes checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/Volumes/Builds/packages/big-sur-arm64/results/4.3/rJava.Rcheck/00_pkg_src/rJava/jri) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' 'CC=clang -arch arm64' 'CFLAGS=-falign-functions=64 -Wall -g -O2' 'LDFLAGS=-L/opt/R/arm64/lib' 'CPPFLAGS=-I/opt/R/arm64/include' --cache-file=/dev/null --srcdir=. checking build system type... aarch64-apple-darwin22.5.0 checking host system type... aarch64-apple-darwin22.5.0 checking for gcc... clang -arch arm64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking for sys/select.h... yes checking Java version... 11.0.12 checking Java compatibility version (integer)... 11 checking whether /usr/bin/javah actually works... yes checking for target flags... -target 1.6 -source 1.6 checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Rglue.c -o Rglue.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c arrayc.c -o arrayc.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c callJNI.c -o callJNI.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c callback.c -o callback.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fields.c -o fields.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c jri_glue.c -o jri_glue.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c loader.c -o loader.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c otables.c -o otables.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rJava.c -o rJava.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c registration.c -o registration.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rjstring.c -o rjstring.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tools.c -o tools.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o registration.o rjstring.o tools.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation (cd ../jri && make) make -C src JRI.jar /Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/bin/javac -target 1.6 -source 1.6 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java warning: [options] bootstrap class path not set in conjunction with -source 6 warning: [options] source value 6 is obsolete and will be removed in a future release warning: [options] target value 1.6 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: ../REXP.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 4 warnings if [ -n "/usr/bin/javah" ]; then /usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine; fi clang -arch arm64 -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -falign-functions=64 -Wall -g -O2 -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include clang -arch arm64 -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -falign-functions=64 -Wall -g -O2 -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include clang -arch arm64 -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -falign-functions=64 -Wall -g -O2 -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include clang -arch arm64 -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -falign-functions=64 -Wall -g -O2 -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -fno-common -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include clang -arch arm64 -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -falign-functions=64 -Wall -g -O2 -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin clang -arch arm64 -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -falign-functions=64 -Wall -g -O2 -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin clang -arch arm64 -c -o rjstring.o rjstring.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -falign-functions=64 -Wall -g -O2 -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/include/darwin -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include clang -arch arm64 -o libjri.jnilib Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o rjstring.o -L/opt/R/arm64/lib -dynamiclib -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/lib/server -ljvm -L/opt/R/arm64/lib -F/Library/Frameworks/R.framework/.. -framework R -L/opt/R/arm64/lib -lpcre2-8 -llzma -lbz2 -lz -licucore -ldl -lm -liconv /Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/bin/javac -target 1.6 -source 1.6 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java warning: [options] bootstrap class path not set in conjunction with -source 6 warning: [options] source value 6 is obsolete and will be removed in a future release warning: [options] target value 1.6 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: ../REXP.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 4 warnings /Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/bin/jar fc JRI.jar org libjri.jnilib rm -f libjri.jnilib cp src/libjri.jnilib libjri.jnilib /Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/bin/javac -target 1.6 -source 1.6 -classpath src/JRI.jar -d examples examples/rtest.java warning: [options] bootstrap class path not set in conjunction with -source 6 warning: [options] source value 6 is obsolete and will be removed in a future release warning: [options] target value 1.6 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: examples/rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 4 warnings /Library/Java/JavaVirtualMachines/zulu-11.jdk/Contents/Home/bin/javac -target 1.6 -source 1.6 -classpath src/JRI.jar -d examples examples/rtest2.java warning: [options] bootstrap class path not set in conjunction with -source 6 warning: [options] source value 6 is obsolete and will be removed in a future release warning: [options] target value 1.6 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: examples/rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 4 warnings installing via 'install.libs.R' to /Volumes/Builds/packages/big-sur-arm64/results/4.3/rJava.Rcheck/00LOCK-rJava/00new/rJava generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rJava)