* installing *source* package ‘phreeqc’ ...
** package ‘phreeqc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CSelectedOutput.cpp -o CSelectedOutput.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c IPhreeqcLib.cpp -o IPhreeqcLib.o
IPhreeqcLib.cpp:716:20: warning: unused variable 'err_msg' [-Wunused-variable]
static const char err_msg[] = "OutputAccumulatedLines: Invalid instance id.\n";
^
IPhreeqcLib.cpp:731:20: warning: unused variable 'err_msg' [-Wunused-variable]
static const char err_msg[] = "OutputErrorString: Invalid instance id.\n";
^
IPhreeqcLib.cpp:746:20: warning: unused variable 'err_msg' [-Wunused-variable]
static const char err_msg[] = "OutputWarningString: Invalid instance id.\n";
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c IPhreeqc.cpp -o IPhreeqc.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R.cpp -o R.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Var.c -o Var.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/advection.cpp -o phreeqcpp/advection.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/basicsubs.cpp -o phreeqcpp/basicsubs.o
phreeqcpp/basicsubs.cpp:371:9: warning: unused variable 'eps_c' [-Wunused-variable]
LDBLE eps_c = eps_r; // Cl concentration corrected eps_r
^
phreeqcpp/basicsubs.cpp:265:49: warning: unused variable 'v_Cl' [-Wunused-variable]
LDBLE ka, l_z, Dw, ff, sqrt_mu, a, a2, a3, av, v_Cl = 1;
^
phreeqcpp/basicsubs.cpp:688:8: warning: unused variable 'rho' [-Wunused-variable]
LDBLE rho = calc_dens();
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/ChartHandler.cpp -o phreeqcpp/ChartHandler.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/ChartObject.cpp -o phreeqcpp/ChartObject.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/cl1.cpp -o phreeqcpp/cl1.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/CurveObject.cpp -o phreeqcpp/CurveObject.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/cvdense.cpp -o phreeqcpp/cvdense.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/cvode.cpp -o phreeqcpp/cvode.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/cxxKinetics.cpp -o phreeqcpp/cxxKinetics.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/cxxMix.cpp -o phreeqcpp/cxxMix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/dense.cpp -o phreeqcpp/dense.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Dictionary.cpp -o phreeqcpp/Dictionary.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/dumper.cpp -o phreeqcpp/dumper.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Exchange.cpp -o phreeqcpp/Exchange.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/ExchComp.cpp -o phreeqcpp/ExchComp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/GasComp.cpp -o phreeqcpp/GasComp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/gases.cpp -o phreeqcpp/gases.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/GasPhase.cpp -o phreeqcpp/GasPhase.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/input.cpp -o phreeqcpp/input.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/integrate.cpp -o phreeqcpp/integrate.o
phreeqcpp/integrate.cpp:737:60: warning: variable 'viscos' set but not used [-Wunused-but-set-variable]
LDBLE new_g2, f_psi2, surf_chrg_eq2, psi_avg2, dif, var1, viscos;
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/inverse.cpp -o phreeqcpp/inverse.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/ISolutionComp.cpp -o phreeqcpp/ISolutionComp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/ISolution.cpp -o phreeqcpp/ISolution.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/isotopes.cpp -o phreeqcpp/isotopes.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Keywords.cpp -o phreeqcpp/Keywords.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/KineticsComp.cpp -o phreeqcpp/KineticsComp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/kinetics.cpp -o phreeqcpp/kinetics.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/mainsubs.cpp -o phreeqcpp/mainsubs.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/model.cpp -o phreeqcpp/model.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/NameDouble.cpp -o phreeqcpp/NameDouble.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/NumKeyword.cpp -o phreeqcpp/NumKeyword.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/nvector.cpp -o phreeqcpp/nvector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/nvector_serial.cpp -o phreeqcpp/nvector_serial.o
phreeqcpp/nvector_serial.cpp:851:12: warning: variable 'xd' set but not used [-Wunused-but-set-variable]
realtype *xd;
^
phreeqcpp/nvector_serial.cpp:850:14: warning: variable 'N' set but not used [-Wunused-but-set-variable]
integertype N;
^
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/parse.cpp -o phreeqcpp/parse.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Parser.cpp -o phreeqcpp/Parser.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/PBasic.cpp -o phreeqcpp/PBasic.o
phreeqcpp/PBasic.cpp:3510:10: warning: unused variable 'pk_Org' [-Wunused-variable]
double pk_Org = pkOrg - 3.0 + e_OA * dif_temp;
^
phreeqcpp/PBasic.cpp:3622:10: warning: unused variable 'lgk_H' [-Wunused-variable]
double lgk_H = it->second[0];
^
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/phqalloc.cpp -o phreeqcpp/phqalloc.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Phreeqc.cpp -o phreeqcpp/Phreeqc.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/PHRQ_base.cpp -o phreeqcpp/PHRQ_base.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/PHRQ_io.cpp -o phreeqcpp/PHRQ_io.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/PHRQ_io_output.cpp -o phreeqcpp/PHRQ_io_output.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/pitzer.cpp -o phreeqcpp/pitzer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/pitzer_structures.cpp -o phreeqcpp/pitzer_structures.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/PPassemblageComp.cpp -o phreeqcpp/PPassemblageComp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/PPassemblage.cpp -o phreeqcpp/PPassemblage.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/prep.cpp -o phreeqcpp/prep.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Pressure.cpp -o phreeqcpp/Pressure.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/print.cpp -o phreeqcpp/print.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Reaction.cpp -o phreeqcpp/Reaction.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/ReadClass.cpp -o phreeqcpp/ReadClass.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/read.cpp -o phreeqcpp/read.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/readtr.cpp -o phreeqcpp/readtr.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/runner.cpp -o phreeqcpp/runner.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/SelectedOutput.cpp -o phreeqcpp/SelectedOutput.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Serializer.cpp -o phreeqcpp/Serializer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/sit.cpp -o phreeqcpp/sit.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/smalldense.cpp -o phreeqcpp/smalldense.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/SolutionIsotope.cpp -o phreeqcpp/SolutionIsotope.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Solution.cpp -o phreeqcpp/Solution.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/spread.cpp -o phreeqcpp/spread.o
phreeqcpp/spread.cpp:178:35: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (count == 2 || count == 3 && (num == TRUE || token[0] == 'c' || token[0] == 'C'))
~~ ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/spread.cpp:178:35: note: place parentheses around the '&&' expression to silence this warning
if (count == 2 || count == 3 && (num == TRUE || token[0] == 'c' || token[0] == 'C'))
^
( )
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/SSassemblage.cpp -o phreeqcpp/SSassemblage.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/SScomp.cpp -o phreeqcpp/SScomp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/SS.cpp -o phreeqcpp/SS.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/step.cpp -o phreeqcpp/step.o
phreeqcpp/step.cpp:624:23: warning: variable 'intensive' set but not used [-Wunused-but-set-variable]
LDBLE sum_fractions, intensive, extensive;
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/StorageBinList.cpp -o phreeqcpp/StorageBinList.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/StorageBin.cpp -o phreeqcpp/StorageBin.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/structures.cpp -o phreeqcpp/structures.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/sundialsmath.cpp -o phreeqcpp/sundialsmath.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/SurfaceCharge.cpp -o phreeqcpp/SurfaceCharge.o
phreeqcpp/SurfaceCharge.cpp:163:7: warning: variable 'DDL_viscosity_defined' set but not used [-Wunused-but-set-variable]
bool DDL_viscosity_defined(false);
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/SurfaceComp.cpp -o phreeqcpp/SurfaceComp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Surface.cpp -o phreeqcpp/Surface.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/System.cpp -o phreeqcpp/System.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/tally.cpp -o phreeqcpp/tally.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Temperature.cpp -o phreeqcpp/Temperature.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/tidy.cpp -o phreeqcpp/tidy.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/transport.cpp -o phreeqcpp/transport.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Use.cpp -o phreeqcpp/Use.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/UserPunch.cpp -o phreeqcpp/UserPunch.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/utilities.cpp -o phreeqcpp/utilities.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phreeqcpp/Utils.cpp -o phreeqcpp/Utils.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o phreeqc.so CSelectedOutput.o IPhreeqcLib.o IPhreeqc.o R.o Var.o phreeqcpp/advection.o phreeqcpp/basicsubs.o phreeqcpp/ChartHandler.o phreeqcpp/ChartObject.o phreeqcpp/cl1.o phreeqcpp/CurveObject.o phreeqcpp/cvdense.o phreeqcpp/cvode.o phreeqcpp/cxxKinetics.o phreeqcpp/cxxMix.o phreeqcpp/dense.o phreeqcpp/Dictionary.o phreeqcpp/dumper.o phreeqcpp/Exchange.o phreeqcpp/ExchComp.o phreeqcpp/GasComp.o phreeqcpp/gases.o phreeqcpp/GasPhase.o phreeqcpp/input.o phreeqcpp/integrate.o phreeqcpp/inverse.o phreeqcpp/ISolutionComp.o phreeqcpp/ISolution.o phreeqcpp/isotopes.o phreeqcpp/Keywords.o phreeqcpp/KineticsComp.o phreeqcpp/kinetics.o phreeqcpp/mainsubs.o phreeqcpp/model.o phreeqcpp/NameDouble.o phreeqcpp/NumKeyword.o phreeqcpp/nvector.o phreeqcpp/nvector_serial.o phreeqcpp/parse.o phreeqcpp/Parser.o phreeqcpp/PBasic.o phreeqcpp/phqalloc.o phreeqcpp/Phreeqc.o phreeqcpp/PHRQ_base.o phreeqcpp/PHRQ_io.o phreeqcpp/PHRQ_io_output.o phreeqcpp/pitzer.o phreeqcpp/pitzer_structures.o phreeqcpp/PPassemblageComp.o phreeqcpp/PPassemblage.o phreeqcpp/prep.o phreeqcpp/Pressure.o phreeqcpp/print.o phreeqcpp/Reaction.o phreeqcpp/ReadClass.o phreeqcpp/read.o phreeqcpp/readtr.o phreeqcpp/runner.o phreeqcpp/SelectedOutput.o phreeqcpp/Serializer.o phreeqcpp/sit.o phreeqcpp/smalldense.o phreeqcpp/SolutionIsotope.o phreeqcpp/Solution.o phreeqcpp/spread.o phreeqcpp/SSassemblage.o phreeqcpp/SScomp.o phreeqcpp/SS.o phreeqcpp/step.o phreeqcpp/StorageBinList.o phreeqcpp/StorageBin.o phreeqcpp/structures.o phreeqcpp/sundialsmath.o phreeqcpp/SurfaceCharge.o phreeqcpp/SurfaceComp.o phreeqcpp/Surface.o phreeqcpp/System.o phreeqcpp/tally.o phreeqcpp/Temperature.o phreeqcpp/tidy.o phreeqcpp/transport.o phreeqcpp/Use.o phreeqcpp/UserPunch.o phreeqcpp/utilities.o phreeqcpp/Utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/phreeqc.Rcheck/00LOCK-phreeqc/00new/phreeqc/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phreeqc)