* installing *source* package ‘mvabund’ ...
** package ‘mvabund’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Rinterface.cpp -o Rinterface.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c anova.cpp -o anova.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calctest.cpp -o calctest.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c glm.cpp -o glm.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c glmtest.cpp -o glmtest.o
In file included from Rinterface.cppIn file included from :In file included from calctest.cpp:In file included from 5In file included from 9glmtest.cpp:
:
:5:
./resampTest.h:426:50glm.cpp: :warning: 5operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
anova.cpp : 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^./resampTest.h./resampTest.h:426::50
:
5./resampTest.h:426:50: warning: :./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
::
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -426operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]./resampTest.h
:warning: 50 : 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^: ^
:
./resampTest.hoperator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]:
426 : 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^warning:
( ):42650:: 50
: note: place parentheses around the '+' expression to silence this warning
operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]warning: ./resampTest.hoperator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -:426:50: note:
./resampTest.h./resampTest.hplace parentheses around the '+' expression to silence this warning ^ : 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -::
426426:50:
~~~~~~~~~~~ ^
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -note: place parentheses around the '+' expression to silence this warning
( ) : 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
^
( )
:
./resampTest.h./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
50: ( )
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
426./resampTest.h:426:50:50: : 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
:./resampTest.h:425./resampTest.h note: place parentheses around the '?:' expression to evaluate it first
note: : : 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(:
place parentheses around the '?:' expression to evaluate it first ^
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -426
^
(36::
./resampTest.h (:425:36:
./resampTest.h:425note: :50./resampTest.h:36place parentheses around the '+' expression to silence this warning : warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
:warning:
note: : 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]425 ^:36: place parentheses around the '?:' expression to evaluate it first : 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n) ~~~~~~~~~~~~ ^
warning: : 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
~~~~~~~~~~~~ ^./resampTest.h:425
operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
:./resampTest.h ~~~~~~~~~~~~ ^36
:: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
./resampTest.h
425:36: ./resampTest.h:425:36: ( ) : 0 + (yi < n) ? (n - yi) * log(1 - mui / n)note:
note: place parentheses around the '+' expression to silence this warning
~~~~~~~~~~~~ ^ : 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
place parentheses around the '+' expression to silence this warning./resampTest.h:425:36: ./resampTest.h ( )note: :425:
: : 0 + (yi < n) ? (n - yi) * log(1 - mui / n)36place parentheses around the '+' expression to silence this warning:
425:36
note: : 0 + (yi < n) ? (n - yi) * log(1 - mui / n):
^
place parentheses around the '?:' expression to evaluate it first./resampTest.h:425note: ( )
place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
: ^
( )
36 : 0 + (yi < n) ? (n - yi) * log(1 - mui / n)./resampTest.h
:./resampTest.h:425:36: :425:36: note: place parentheses around the '?:' expression to evaluate it first
^ ^ : 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
note: ( )
(
place parentheses around the '?:' expression to evaluate it first (./resampTest.hnote: place parentheses around the '?:' expression to evaluate it first
:
425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
./resampTest.h : 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^ : 0 + (yi < n) ? (n - yi) * log(1 - mui / n) ^
(
./resampTest.h::
(433433
:./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]:41: warning: 41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
^
./resampTest.h:433: : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui))) : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
41
(
~~~~~~~~~~~~ ^
: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
./resampTest.h : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.hoperator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]./resampTest.h
::./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
433 : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui))):433:: : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^4141: :
note: place parentheses around the '+' expression to silence this warning
433:./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
~~~~~~~~~~~~ ^41./resampTest.h:433:41:
: note: note: place parentheses around the '+' expression to silence this warning./resampTest.h
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
: ^433 : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))place parentheses around the '+' expression to silence this warning:41:
^
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
( )
^
( )
( )
note: ./resampTest.hnote: place parentheses around the '+' expression to silence this warningplace parentheses around the '?:' expression to evaluate it first
./resampTest.h : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui))) : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui))):
^
( )
:433:41: note: place parentheses around the '?:' expression to evaluate it first
433 : 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))./resampTest.h:./resampTest.h41:
:: ^
(
433433 ^note: :place parentheses around the '?:' expression to evaluate it first
41:
(
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
note: :41: note: place parentheses around the '?:' expression to evaluate it first
(
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))place parentheses around the '?:' expression to evaluate it first
^
(
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c io.cpp -o io.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rnd.cpp -o rnd.o
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c simutility.cpp -o simutility.o
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c summary.cpp -o summary.o
In file included from rnd.cpp:37:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
In file included from io.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
In file included from simutility.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
In file included from summary.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mvabund.so RcppExports.o Rinterface.o anova.o calctest.o glm.o glmtest.o io.o rnd.o simutility.o summary.o -L/opt/R/arm64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/mvabund.Rcheck/00LOCK-mvabund/00new/mvabund/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvabund)