* installing *source* package ‘markerpen’ ...
** package ‘markerpen’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -DEIGEN_MAX_ALIGN_BYTES=32 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RSpectra/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -DEIGEN_MAX_ALIGN_BYTES=32 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RSpectra/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pca_pen.cpp -o pca_pen.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -DEIGEN_MAX_ALIGN_BYTES=32 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RSpectra/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c prox_fantope.cpp -o prox_fantope.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -DEIGEN_MAX_ALIGN_BYTES=32 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RSpectra/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c walltime.cpp -o walltime.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/markerpen.h:4:
In file included from In file included from prox_fantope.cpp:1:
In file included from ./prox_fantope.h:4:
In file included from ./common.hpca_pen.cppIn file included from :4:
In file included from ./common.h:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from :29:
In file included from :25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.hIn file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: Index count = 0;61:
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0; Index count = 0;
^
^
In file included from pca_pen.cpp:4:
In file included from ./common.h:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.hIn file included from prox_fantope.cppIn file included from RcppExports.cpp:4:
In file included from ./../inst/include/markerpen.h:4:1:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.hIn file included from ./prox_fantope.h::29:
In file included from :78/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse::29:
4:
In file included from ./common.hIn file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78::4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
9In file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
In file included from warning: 9: warning: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparsevariable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
:29:
In file included from Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
78:9: ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from prox_fantope.cpp:1:
In file included from ./prox_fantope.h:4:
In file included from ./common.h:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.hIn file included from RcppExports.cpp:4:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]pca_pen.cpp
:
Index replacements = 0;
^
In file included from ./../inst/include/markerpen.h:4:4:
In file included from ./common.h:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31:
In file included from :46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
Index replacements = 0;
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
^
Index replacements = 0;
^
In file included from prox_fantope.cpp:1:
In file included from ./prox_fantope.h:4:
In file included from pca_pen.cpp:4In file included from RcppExports.cpp:4:
In file included from ./../inst/include/markerpen.h:4:
In file included from ./common.h:4:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h./common.h:4:
:37:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.hIn file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h45:25:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37:
:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45::
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:7246: warning: variable 'count' set but not used [-Wunused-but-set-variable]246:7:
7: warning: int count = 0;
^: variable 'count' set but not used [-Wunused-but-set-variable]
warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
int count = 0;
^
5 warnings generated.
5 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o markerpen.so RcppExports.o pca_pen.o prox_fantope.o walltime.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/markerpen.Rcheck/00LOCK-markerpen/00new/markerpen/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (markerpen)