- using R version 4.3.3 (2024-02-29)
- using platform: aarch64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘healthyR.ai/DESCRIPTION’ ... OK
- this is package ‘healthyR.ai’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘healthyR.ai’ can be installed ... [7s/7s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking startup messages can be suppressed ... [2s/2s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [5s/6s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [9s/10s] ERROR
Running examples in ‘healthyR.ai-Ex.R’ failed
The error most likely occurred in:
> ### Name: hai_umap_list
> ### Title: UMAP Projection
> ### Aliases: hai_umap_list umap_list
>
> ### ** Examples
>
> library(healthyR.data)
== Welcome to healthyR.data ===========================================================================
If you find this package useful, please leave a star:
https://github.com/spsanderson/healthyR.data'
If you encounter a bug or want to request an enhancement please file an issue at:
https://github.com/spsanderson/healthyR.data/issues
Thank you for using healthyR.data
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> library(broom)
>
> data_tbl <- healthyR_data %>%
+ filter(ip_op_flag == "I") %>%
+ filter(payer_grouping != "Medicare B") %>%
+ filter(payer_grouping != "?") %>%
+ select(service_line, payer_grouping) %>%
+ mutate(record = 1) %>%
+ as_tibble()
>
> uit_tbl <- hai_kmeans_user_item_tbl(
+ .data = data_tbl,
+ .row_input = service_line,
+ .col_input = payer_grouping,
+ .record_input = record
+ )
>
> kmm_tbl <- hai_kmeans_mapped_tbl(uit_tbl)
>
> umap_list(.data = uit_tbl, kmm_tbl, 3)
Error in irlba::irlba(L, nv = n, nu = 0, maxit = iters) :
function 'as_cholmod_sparse' not provided by package 'Matrix'
Calls: umap_list ... irlba_tsvd_normalized_laplacian_init -> irlba_spectral_tsvd
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [23s/28s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘auto-kmeans.Rmd’ using rmarkdown
--- finished re-building ‘auto-kmeans.Rmd’
--- re-building ‘getting-started.Rmd’ using rmarkdown
--- finished re-building ‘getting-started.Rmd’
--- re-building ‘kmeans-umap.Rmd’ using rmarkdown
Quitting from lines 147-148 [umap_list] (kmeans-umap.Rmd)
Error: processing vignette 'kmeans-umap.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘kmeans-umap.Rmd’
SUMMARY: processing the following file failed:
‘kmeans-umap.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [8s/9s] OK
- DONE
Status: 2 ERRORs
- using check arguments '--no-clean-on-error '