Check results for 'diseasystore'

using R version 4.3.3 (2024-02-29)
using platform: aarch64-apple-darwin20 (64-bit)
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.4
using session charset: UTF-8
checking for file ‘diseasystore/DESCRIPTION’ ... OK
this is package ‘diseasystore’ version ‘0.3.0’
package encoding: UTF-8
checking package namespace information ... OK
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checking whether package ‘diseasystore’ can be installed ... [6s/7s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
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checking examples ... [1s/2s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [31s/36s] ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [31s/35s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > > test_check("diseasystore") Loading required package: diseasystore ##### Following backends will be tested: SQLite #### This message is displayed once per session. ##### Following backends will be tested: #### This message is displayed once per session. [ FAIL 12 | WARN 0 | SKIP 13 | PASS 411 ] ══ Skipped tests (13) ══════════════════════════════════════════════════════════ • "SQLiteConnection" %in% skip_backends is TRUE (3): 'test-DiseasystoreSimulist.R:2:1', 'test-DiseasystoreSimulist.R:2:1', 'test-DiseasystoreSimulist.R:2:1' • empty test (7): 'test-DiseasystoreEcdcRespitoryViruses.R:7:1', 'test-DiseasystoreEcdcRespitoryViruses.R:7:1', 'test-DiseasystoreEcdcRespitoryViruses.R:7:1', 'test-DiseasystoreSimulist.R:2:1', 'test-DiseasystoreSimulist.R:2:1', 'test-DiseasystoreSimulist.R:2:1', 'test-DiseasystoreSimulist.R:2:1' • is.null(skip_backends) is TRUE (2): 'test-DiseasystoreEcdcRespitoryViruses.R:7:1', 'test-DiseasystoreGoogleCovid19.R:5:1' • remote_data_available is not TRUE (1): 'test-DiseasystoreEcdcRespitoryViruses.R:7:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can initialise with remote source_conn ── Expected `ds$get_feature(feature)` to run without any errors. i Actually got a <purrr_error_indexed> with text: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Failure ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can initialise with default source_conn ── Expected `ds$get_feature(ds$available_features[[1]])` to run without any errors. i Actually got a <purrr_error_indexed> with text: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Error ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can retrieve features from a fresh state ── <purrr_error_indexed/rlang_error/error/condition> Error in `map2(.x, .y, .f, ..., .progress = .progress)`: i In index: 1. Caused by error in `pmap()`: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Error ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can extend existing features ── <purrr_error_indexed/rlang_error/error/condition> Error in `map2(.x, .y, .f, ..., .progress = .progress)`: i In index: 1. Caused by error in `pmap()`: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Failure ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can key_join features ── Expected `ds$key_join_features(...)` to run without any errors. i Actually got a <purrr_error_indexed> with text: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Failure ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can key_join features ── Expected `ds$key_join_features(...)` to run without any errors. i Actually got a <purrr_error_indexed> with text: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Failure ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can key_join features ── Expected `ds$key_join_features(...)` to run without any errors. i Actually got a <purrr_error_indexed> with text: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Failure ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can key_join features ── Expected `ds$key_join_features(...)` to run without any errors. i Actually got a <purrr_error_indexed> with text: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Failure ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can key_join features ── Expected `ds$key_join_features(...)` to run without any errors. i Actually got a <purrr_error_indexed> with text: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Failure ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can key_join features ── Expected `ds$key_join_features(...)` to run without any errors. i Actually got a <purrr_error_indexed> with text: i In index: 1. Caused by error: ! vector memory exhausted (limit reached?) ── Error ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 can key_join features ── <purrr_error_indexed/rlang_error/error/condition> Error in `pmap(.l, .f, ..., .progress = .progress)`: i In index: 1. Caused by error: ! e$message (`actual`) not identical to paste("(At least one) stratification feature does not match observable aggregator. Not implemented yet.") (`expected`). `names(actual)` is a character vector ('i') `names(expected)` is absent actual vs expected - i"In index: 1." + "(At least one) stratification feature does not match observable aggregator. Not implemented yet." ── Error ('test-DiseasystoreGoogleCovid19.R:5:1'): DiseasystoreGoogleCovid19 key_join fails gracefully ── <purrr_error_indexed/rlang_error/error/condition> Error in `pmap(.l, .f, ..., .progress = .progress)`: i In index: 1. Caused by error: ! Check on 'e$message' failed: Must comply to pattern 'Stratification variable not found. Available stratification variables are: age_group, country_id, country, region_id, region, subregion_id, subregion' [ FAIL 12 | WARN 0 | SKIP 13 | PASS 411 ] Error: Test failures In addition: Warning message: call dbDisconnect() when finished working with a connection Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking re-building of vignette outputs ... [46s/53s] OK
checking PDF version of manual ... [4s/4s] OK
DONE Status: 1 ERROR
using check arguments '--no-clean-on-error '