• using R version 4.3.3 (2024-02-29)
• using platform: aarch64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘coxme/DESCRIPTION’ ... OK
• this is package ‘coxme’ version ‘2.2-22’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘coxme’ can be installed ... [6s/11s] OK See the install log for details.
• used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used SDK: ‘MacOSX11.3.sdk’
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for GNU extensions in Makefiles ... OK
• checking include directives in Makefiles ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [33s/51s] OK   Running ‘brfit.R’ [2s/3s]   Running ‘lmekin1.R’ [2s/3s]   Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK   Running ‘lmekin2.R’ [1s/2s]   Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK   Running ‘nest1.R’ [1s/2s]   Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK   Running ‘nest2.R’ [1s/1s]   Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK   Running ‘refine.R’ [1s/2s]   Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK   Running ‘refine1.R’ [1s/2s]   Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK   Running ‘refine2.R’ [1s/2s]   Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK   Running ‘refine3.R’ [1s/2s]   Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK   Running ‘shrink.R’ [1s/2s]   Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK   Running ‘slope1.R’ [5s/7s]   Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK   Running ‘slope2.R’ [2s/2s]   Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK   Running ‘slope3.R’ [2s/2s]   Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK   Running ‘slope4.R’ [4s/5s]   Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK   Running ‘strata1.R’ [1s/2s]   Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK   Running ‘test0.R’ [1s/2s]   Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK   Running ‘test1.R’ [1s/2s]   Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK   Running ‘test2.R’ [1s/2s]   Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK   Running ‘test3.R’ [1s/2s]   Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK   Running ‘test4.R’ [1s/2s]   Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK   Running ‘twoterm.R’ [1s/2s]   Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [15s/22s] OK   ‘coxme.Rnw’... [6s/9s] OK   ‘laplace.Rnw’... [5s/7s] OK   ‘lmekin.Rnw’... [3s/4s] OK   ‘variance.Rnw’... [1s/2s] OK
• checking re-building of vignette outputs ... [27s/40s] OK
• checking PDF version of manual ... [5s/7s] OK
• DONE Status: OK
• using check arguments '--no-clean-on-error '