* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.3/abn.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.4
* using session charset: UTF-8
* checking for file ‘abn/DESCRIPTION’ ... OK
* this is package ‘abn’ version ‘3.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘abn’ can be installed ... [42s/57s] OK
See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-arm64/abn-00install.html' for details.
* used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... NOTE
  installed size is 13.2Mb
  sub-directories of 1Mb or more:
    data      1.0Mb
    extdata   2.9Mb
    libs      8.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking startup messages can be suppressed ... [2s/2s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [5s/5s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [381s/421s] ERROR
  Running ‘testthat.R’ [381s/421s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    9. │     │ └─base::withCallingHandlers(...)
   10. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   11. └─abn::buildScoreCache(...)
   12.   └─abn::buildScoreCache.bayes(...)
   13.     └─... %do% ...
   14.       └─e$fun(obj, substitute(ex), parent.frame(), e$data)
   15.         └─base::library(p, character.only = TRUE)
  
  [ FAIL 7 | WARN 0 | SKIP 56 | PASS 444 ]
  Deleting unused snapshots:
  • tographviz/graph.dot
  • tographviz/graph1.dot
  • tographviz/graph_group.dot
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... [14s/16s] WARNING
Errors in running code in vignettes:
when running code in ‘model_specification.Rmd’
  ...
+     length(max.pars)))

> for (i in max.pars) {
+     mycache <- buildScoreCache(data.df = mydat, data.dists = mydists, 
+         method = "bayes", max.parents = i)
+     mp .... [TRUNCATED] 

  When sourcing ‘model_specification.R’:
Error: there is no package called ‘INLA’
Execution halted
when running code in ‘quick_start_example.Rmd’
  ...
+     b .... [TRUNCATED] 

> max.par <- 4

> mycache <- buildScoreCache(data.df = mydat, data.dists = mydists, 
+     method = "bayes", max.parents = max.par)

  When sourcing ‘quick_start_example.R’:
Error: there is no package called ‘INLA’
Execution halted

  ‘data_simulation.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘mixed_effect_BN_model.Rmd’ using ‘UTF-8’... [8s/10s] OK
  ‘model_specification.Rmd’ using ‘UTF-8’... failed
  ‘multiprocessing.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘parameter_learning.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘quick_start_example.Rmd’ using ‘UTF-8’... failed
  ‘structure_learning.Rmd’ using ‘UTF-8’... [2s/2s] OK
* checking re-building of vignette outputs ... [24s/28s] OK
* checking PDF version of manual ... [6s/8s] OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 9:51