* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.3/PKNCA.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.4 * using session charset: UTF-8 * checking for file ‘PKNCA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PKNCA’ version ‘0.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PKNCA’ can be installed ... [6s/6s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-arm64/PKNCA-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [22s/24s] OK Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [22s/23s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... [35s/34s] ERROR Errors in running code in vignettes: when running code in ‘v03-selection-of-calculation-intervals.Rmd’ ... > library(ggplot2) > source("../tests/testthat/generate.data.R") Warning in file(filename, "r", encoding = encoding) : cannot open file '../tests/testthat/generate.data.R': No such file or directory When sourcing ‘v03-selection-of-calculation-intervals.R’: Error: cannot open the connection Execution halted ‘v01-introduction-and-usage.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v02-example-theophylline.Rmd’ using ‘UTF-8’... [3s/2s] OK ‘v03-selection-of-calculation-intervals.Rmd’ using ‘UTF-8’... failed ‘v04-sparse.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v05-auc-calculation-with-PKNCA.Rmd’ using ‘UTF-8’... [2s/2s] OK ‘v06-half-life-calculation-tobit.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v06-half-life-calculation.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v07-post-processing.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v07-unit-conversion.Rmd’ using ‘UTF-8’... [2s/2s] OK ‘v08-data-imputation.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v20-superposition.Rmd’ using ‘UTF-8’... [4s/3s] OK ‘v21-methods-for-dose-aware-interpolation-and-extrapolation.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v22-time-to-steady-state.Rmd’ using ‘UTF-8’... [5s/3s] OK ‘v23-auc-integration-methods.Rmd’ using ‘UTF-8’... [5s/5s] OK ‘v30-training-session.Rmd’ using ‘UTF-8’... [6s/6s] OK ‘v40-options-for-controlling-PKNCA.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v60-PKNCA-validation.Rmd’ using ‘UTF-8’... [1s/1s] OK ‘v80-writing-parameter-functions.Rmd’ using ‘UTF-8’... [1s/1s] OK * checking re-building of vignette outputs ... [72s/75s] OK * checking PDF version of manual ... [8s/9s] OK * DONE Status: 1 ERROR * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 2:59